PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G222400.1

Common Name

B456_006G222400, LOC105800372

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 254aa MW: 28123.7 Da PI: 5.2034

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G222400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.4	1.8e-34	39	93	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Gorai.006G222400.1 39 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 93 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-33	36	94	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.095	36	96	IPR017930	Myb domain
SuperFamily	SSF46689	1.31E-17	38	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-24	39	94	IPR006447	Myb domain, plants
Pfam	PF00249	6.9E-9	41	92	IPR001005	SANT/Myb domain
Pfam	PF14379	3.6E-26	137	183	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MYSAIRSLPL DGSVGDYEGS FDGTNLPSDA CLVLTTDPKP RLRWTAELHE RFVDAVTQLG 60 GPDKATPKTI MRTMGVKGLT LYHLKSHLQK YRLGKQSCKE STDNSKDASC VAESQDTGSS 120 TTSSSKLVAQ DLNDGYQVTE ALRVQMEVQR RLHEQLEVQR RLQLRIEAQS KYLQTILEKA 180 CKALSDHVAA SAGLEAAREE LSELGIKISN DFQGMVPFDN IKLPSLPELP AALENKATTT 240 DWYYEEETQA LVW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589523	1e-101	JX589523.1 Gossypium hirsutum clone NBRI_GE24244 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486916.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	Q94A57	1e-133	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A0D2NWT5	0.0	A0A0D2NWT5_GOSRA; Uncharacterized protein
STRING	Gorai.006G222400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-127	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G222400.1
Entrez Gene	105800372

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]