PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G222400.4
Common NameB456_006G222400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 244aa    MW: 26668.2 Da    PI: 6.0398
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G222400.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.71.9e-313992155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        kprlrWt eLHerFv+av+qLGG++ +tPkti+++m+vkgLtl+h+kSHLQkYRl
  Gorai.006G222400.4 39 KPRLRWTAELHERFVDAVTQLGGPD-TTPKTIMRTMGVKGLTLYHLKSHLQKYRL 92
                        79**********************9.8***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-323693IPR009057Homeodomain-like
PROSITE profilePS5129412.3313695IPR017930Myb domain
SuperFamilySSF466891.58E-173895IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-223993IPR006447Myb domain, plants
PfamPF002495.1E-94191IPR001005SANT/Myb domain
PfamPF143793.4E-26136182IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MYSAIRSLPL DGSVGDYEGS FDGTNLPSDA CLVLTTDPKP RLRWTAELHE RFVDAVTQLG  60
GPDTTPKTIM RTMGVKGLTL YHLKSHLQKY RLGKQSCKES TDNSKDASCV AESQDTGSST  120
TSSSKLVAQD LNDGYQVTEA LRVQMEVQRR LHEQLEVQRR LQLRIEAQSK YLQTILEKAC  180
KALSDHVAAS AGLEAAREEL SELGIKISND FQGMVPFDNI KLPSLPELPA ALENKATTTG  240
MPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-173994258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-173994258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-173994157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-173994157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-173994157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-173994157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-173994258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-173994258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-173994258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-173994258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-173994258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-173994258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5895231e-101JX589523.1 Gossypium hirsutum clone NBRI_GE24244 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486916.11e-170PREDICTED: myb family transcription factor APL-like
SwissprotQ94A571e-130PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A0D2QEV61e-180A0A0D2QEV6_GOSRA; Uncharacterized protein
STRINGGorai.006G222400.11e-169(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-124G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]