PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G236200.1
Common NameB456_006G236200, LOC105800494
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 759aa    MW: 82340.7 Da    PI: 6.1254
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G236200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.28.5e-1293887462374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lLl+cAeavs++++e a+++L +ls+l++p g++ qR+aayf eA++arl++s+ +++  lp+ + s  ++++ ++a+++f+ +sP++k
  Gorai.006G236200.1 388 LTLLLQCAEAVSANNFEDANRMLLELSQLSTPFGTSAQRVAAYFSEAISARLVSSCLGICGGLPSIPPS--HTQKMVSAFQVFNGISPFVK 476
                         579************************************************************999887..5899999************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         fsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va
  Gorai.006G236200.1 477 FSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGT----SLEALEATGKRLSDFADKLGIPFEFCP-VA 562
                         *********************************************************....9**************************.7* PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +++ +le+e+L+v++ Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a+
  Gorai.006G236200.1 563 DKVGNLEPERLNVSKTEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-GGSFLGRFVEAIHYYSALFDSLGAS 646
                         ************************9..999999999999....**********************.789********************** PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                         +++eseer++vE++ll++ei+nv+a  g +r  ++ ++++Wre+l+++GFkp++l  +aa+qa lll +++sdgy++ e++g+l lgWkd 
  Gorai.006G236200.1 647 YGEESEERHVVEQQLLSKEIRNVLALGGPSRSSEEVKFHNWREKLQQSGFKPISLAGNAAAQATLLLGMFPSDGYTLVEDNGALKLGWKDL 737
                         ******************************************************************************************* PP

                GRAS 366 pLvsvSaWr 374
                          L+++SaWr
  Gorai.006G236200.1 738 CLLTASAWR 746
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.154361726IPR005202Transcription factor GRAS
PfamPF035142.9E-126388746IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MLMAACDLVG ENGGINGRNS NDESPMRSTM RKRMASEVAD YHRFPRRTQF VSDNNMACSF  60
MAATGASNNP NPLFNYSTMN MDNVNTVVPS ANFAALTSAG PAFLSTTASN FSCVDAVGTN  120
TPQPPAVCGF SGLPLFPPTE RNRNTAVDSA AVTATSVNTT VPVSLAPISN SMDDSSATAW  180
IDGVIRDLIH TSSNVSIPQL IHNVREIIYP CNPNLAALLE YRLRSLMDPL ERRRKEAAPP  240
PLHLPEVSLA RHHSQQQQQQ GSSGLTLNLD SAIDSLPNYS LTEPCAMNQY LSWGITPLPI  300
SSNNQVSSSP SATTPPVPSL NQHHRAQEQP LVQENTSPVE KTTASTATVG TTTTAPTSTV  360
ETVQACNGRD RKEELRQQKR DEEGLHLLTL LLQCAEAVSA NNFEDANRML LELSQLSTPF  420
GTSAQRVAAY FSEAISARLV SSCLGICGGL PSIPPSHTQK MVSAFQVFNG ISPFVKFSHF  480
TANQAIQEAF EREERVHIID LDIMQGLQWP GLFHILASRP GGPPHVRLTG LGTSLEALEA  540
TGKRLSDFAD KLGIPFEFCP VADKVGNLEP ERLNVSKTEA VAVHWLQHSL YDVTGSDTNT  600
LWLLQRLAPK VVTVVEQDLS HGGSFLGRFV EAIHYYSALF DSLGASYGEE SEERHVVEQQ  660
LLSKEIRNVL ALGGPSRSSE EVKFHNWREK LQQSGFKPIS LAGNAAAQAT LLLGMFPSDG  720
YTLVEDNGAL KLGWKDLCLL TASAWRPFHA TTTTALHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03717473380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.13120.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488178640.0
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487125.10.0PREDICTED: protein SCARECROW-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A0D2T3D30.0A0A0D2T3D3_GOSRA; Uncharacterized protein
STRINGGorai.006G236200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81642640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]