PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G246400.1

Common Name

B456_006G246400, LOC105797991

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 221aa MW: 25370 Da PI: 10.0315

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G246400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.4e-07	74	118	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er RR++ + +++ L ++lP +K++K +i++ A++ +++L Gorai.006G246400.1 74 HMMNERIRREKQKRSYSALHSMLPLG-----TKNDKNSIVQTATKRVQEL 118 889*********************97.....7999999999999988877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-10	66	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.55E-7	67	119	No hit	No description
PROSITE profile	PS50888	11.852	69	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-5	74	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-7	74	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0075	75	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MDELIKQLLQ GEIFWYETKP TFVPYSNTPR QVEPGRNDGG NSENMNKKMI GFLMKSWPAT 60 VETKDGEKER CFRHMMNERI RREKQKRSYS ALHSMLPLGT KNDKNSIVQT ATKRVQELEW 120 LKKDLERRNY ELKSNHNNKI GLKVENPTSG IDSMLETLKC LKELDSNPTI IQSNFTPQQF 180 LAVLAFPTQG EAAKVEKALD RTLQETGRKL QGPRNGPTPF *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483306.1	1e-164	PREDICTED: transcription factor bHLH92
TrEMBL	A0A0D2T3V6	1e-163	A0A0D2T3V6_GOSRA; Uncharacterized protein
STRING	Gorai.006G246400.1	1e-163	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	9e-43	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G246400.1
Entrez Gene	105797991

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]