PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G247700.1
Common NameB456_006G247700, LOC105797992
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 193aa    MW: 21965.8 Da    PI: 10.1315
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G247700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.2e-054466123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  Gorai.006G247700.1 44 YTCSFCKREFRSAQALGGHMNVH 66
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-74171No hitNo description
Gene3DG3DSA:3.30.160.602.9E-44270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.5E-74468IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.6764471IPR007087Zinc finger, C2H2
SMARTSM003550.00384466IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEKKSLRVDH SIIIGNNKLK GSSWREFGEE DYVCGGISWP PRSYTCSFCK REFRSAQALG  60
GHMNVHRRER ARLLRQSSTP PGDYKDQPSF LNLNPNPNPN FRSSSSLIAP SFCSTLPHHL  120
SSSSSGFSNE MKKWRRKGAK SVFQVKEFKD YECNNNNLLK KKKKINESVR LELEVGVVRD  180
SNEDLDLELR LG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-143966229superman protein
2l1o_A3e-143966229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483307.11e-140PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0D2NY191e-139A0A0D2NY19_GOSRA; Uncharacterized protein
STRINGGorai.006G247700.11e-140(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.17e-22C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]