PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G258800.1

Common Name

B456_006G258800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 453aa MW: 50779.5 Da PI: 6.1924

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G258800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	91.8	1.1e-28	163	276	100	215
GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 qaI+e v+++++vHiiD++i+ G+QW L+qaL sR e p l++T+v+ + k+ +e tg+ L +fA++lg+pf+f+v+v++++ dl Gorai.006G258800.1 163 QAIVEHVSKAKKVHIIDLGIKTGVQWTVLMQALVSRYECPIeILKVTTVAT---NGKRLIEGTGKWLLSFAQSLGLPFSFKVVVVSDMLDL 250 8*********************************9766549****...5789999************************** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlld 215 + + ++v+ gE++aV + l ++l+ Gorai.006G258800.1 251 KENLFEVDVGETVAVYAATTLRSMLA 276 ****************99999885 PP
2	GRAS	85.8	7.4e-27	276	402	246	371
GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336 a+ ns+ F++rf+eal ++s+ fd+l + + r+ +r vE +++++ i+n+va+eg+err rh ++ Wr+ + + G+++v+ls + q Gorai.006G258800.1 276 ANQNSPMFANRFVEALFFFSVYFDCLVTCMKRNCVNREIVESVYFAEGIRNMVAAEGEERRVRHVKFDVWRAFFVRYGMEEVELSMSSLYQ 366 588************************************************************************************** PP GRAS 337 aklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371 a l+l++++ ++ +++ + ++l+ Wk+ p+ s+S Gorai.006G258800.1 367 ACLVLKTFAcGRFCTLDMNGKCLLVRWKGTPVHSIS 402 *****999899***************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	15.241	163	384	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-26	163	276	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MSNDVLLSFV GGFPDKRSVC NNVCENFYGA AIDGCYGLLN NYGNEFERLH TGRKTEEVDD 60 VTVLKNGVEG NLSTEDVMRV AGKMFIHSSR RSIDLSFSGL TLKETQDVEL ALLLLAAAEK 120 VGYREFECTS MLVKECEFMS SRIGNLVQQK IEIDTGKGSG RIQAIVEHVS KAKKVHIIDL 180 GIKTGVQWTV LMQALVSRYE CPIEILKVTT VATNGKRLIE GTGKWLLSFA QSLGLPFSFK 240 VVVVSDMLDL KENLFEVDVG ETVAVYAATT LRSMLANQNS PMFANRFVEA LFFFSVYFDC 300 LVTCMKRNCV NREIVESVYF AEGIRNMVAA EGEERRVRHV KFDVWRAFFV RYGMEEVELS 360 MSSLYQACLV LKTFACGRFC TLDMNGKCLL VRWKGTPVHS ISLQVLSKLQ DQASTRFHPC 420 MESFDDYLSE LNESFNGRCY NLSGDKIKDV SS*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MSNDVLLSFV GGFPDKRSVC NNVCENFYGA AIDGCYGLLN NYGNEFERLH TGRKTEEVDD  60
VTVLKNGVEG NLSTEDVMRV AGKMFIHSSR RSIDLSFSGL TLKETQDVEL ALLLLAAAEK  120
VGYREFECTS MLVKECEFMS SRIGNLVQQK IEIDTGKGSG RIQAIVEHVS KAKKVHIIDL  180
GIKTGVQWTV LMQALVSRYE CPIEILKVTT VATNGKRLIE GTGKWLLSFA QSLGLPFSFK  240
VVVVSDMLDL KENLFEVDVG ETVAVYAATT LRSMLANQNS PMFANRFVEA LFFFSVYFDC  300
LVTCMKRNCV NREIVESVYF AEGIRNMVAA EGEERRVRHV KFDVWRAFFV RYGMEEVELS  360
MSSLYQACLV LKTFACGRFC TLDMNGKCLL VRWKGTPVHS ISLQVLSKLQ DQASTRFHPC  420
MESFDDYLSE LNESFNGRCY NLSGDKIKDV SS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-22	163	394	118	368	Protein SCARECROW
5b3h_A	1e-22	163	394	117	367	Protein SCARECROW
5b3h_D	1e-22	163	394	117	367	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022761269.1	1e-165	DELLA protein RGL1-like
TrEMBL	A0A0D2QH25	0.0	A0A0D2QH25_GOSRA; Uncharacterized protein
STRING	Gorai.006G258800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM36832	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-33	RGA-like 2

Link Out ? help Back to Top
Phytozome	Gorai.006G258800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]