PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G265200.1
Common NameB456_006G265200, LOC105800771
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 293aa    MW: 32660.2 Da    PI: 6.102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G265200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.74.9e-33151209159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK vk+s++prsYYrCts+gC vkk+vers +d++++++tYeg+H+h+
  Gorai.006G265200.1 151 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSNGCGVKKRVERSFDDTTIIITTYEGKHTHP 209
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-34136211IPR003657WRKY domain
SuperFamilySSF1182903.27E-29144211IPR003657WRKY domain
PROSITE profilePS5081132.569146211IPR003657WRKY domain
SMARTSM007741.1E-38151210IPR003657WRKY domain
PfamPF031068.1E-27152209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRFSDENSTA AAESGGGDGG GDKWDSLGFM ELLGIHQDFF ESFIQQPALI LSPPLLQLDT  60
EQKPQAGLQL QPYSTVSEFS ESLNNPPPTP NSSSISSLSN EAANINEQST NAGDDEEQDK  120
TKKQLKHKKK NQKKQKEPRF AFITKTEIDH LDDGYRWRKY GQKAVKNSPY PRSYYRCTSN  180
GCGVKKRVER SFDDTTIIIT TYEGKHTHPC PVQPRGSGFG NIGLTPSFMV HHQYQDQQQE  240
EVEQPYMYAS LSPLNPCFSP NGSSSASLIR DHGLLQDIVL PIKTRNEANE QV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-28139211274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384720.0KM438472.1 Gossypium aridum WRKY78 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487536.10.0PREDICTED: probable WRKY transcription factor 48
SwissprotO229005e-51WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A0D2QHB10.0A0A0D2QHB1_GOSRA; Uncharacterized protein
STRINGGorai.006G265200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.13e-46WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  5. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]