PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G267800.1

Common Name

B456_006G267800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 140aa MW: 16746.3 Da PI: 7.5507

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G267800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	29.8	1.7e-09	36	81	2	45
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePw 45 p+GfrF Pt eelv++yL kkv g++l+++++ ++e++ y++ P Gorai.006G267800.1 36 PVGFRFLPTPEELVKQYLIKKVLGNPLPVSDFleVEEAEFYTTPPM 81 79************************99877645888899999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-15	33	130	IPR003441	NAC domain
Pfam	PF02365	6.7E-12	36	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MAMVEVEKNY EDVHQNWGHR IPVEEDYCHD WHNQPPVGFR FLPTPEELVK QYLIKKVLGN 60 PLPVSDFLEV EEAEFYTTPP MSCGSWKLRK TREIFDTMGN KIAFKFCFVY YSKLGKTHWR 120 IDEFRLPAEF YKYFKVKVR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483320.1	7e-26	PREDICTED: protein FEZ-like isoform X2
TrEMBL	A0A0D2T4W9	1e-100	A0A0D2T4W9_GOSRA; Uncharacterized protein
STRING	Gorai.006G267800.1	1e-101	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM36835	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52890.1	1e-08	NAC domain containing protein 19

Link Out ? help Back to Top
Phytozome	Gorai.006G267800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]