PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G269200.1
Common NameB456_006G269200, LOC105800807
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 514aa    MW: 56113.4 Da    PI: 9.3061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G269200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.62e-17257306255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR++iN++f++Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  Gorai.006G269200.1 257 RSKHSATEQRRRSKINDRFQRLRGIIPNS----DQKKDKASFLLEVIEYIQFLQ 306
                         899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.8E-24252328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-18254327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.742255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-15257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-14257310No hitNo description
SMARTSM003532.8E-13261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MELPQSWPLG AEGRKPTHDF LSLYSHSSVL QDPRPPAQDG YRKTHDFLQL EALGKAIAKE  60
ETTAEEAMAE KPLPPPPPAP PPRSAEHVLP GGIGTYSISH ISTRAEGALF TVARRSISER  120
NDETSNSSSY TGSGFTLWEE SAAKKGKTGK ENTGETLAVR EAAGKERQWA TSSLERPSQS  180
SSTNNHRNSF SSLSSSRPSS KQKSFMEMMK SAQYSDFEED EDFNLKKESS TTTRSKGELR  240
VKVDGKSAAN QKANTSRSKH SATEQRRRSK INDRFQRLRG IIPNSDQKKD KASFLLEVIE  300
YIQFLQEKVH KHEGAYQGWN HEPSKLMPWR NNETPTENHA DQSRAINSMS TPSALVFSVA  360
PNIPGTAMNP VDSDMSTATT LRPVDLGPAM MNKTMPFAMS PQTNSITSAQ STPLLPSDAE  420
TNGALPIKKL KEQELTVEGG TISISSVYSQ GLLNTLTQAL QASGVDLSHA SLSVQIELGK  480
QSSTGYTAPT STLKGQGDSI HNSRGNTFKR WVC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487600.10.0PREDICTED: transcription factor BIM1-like isoform X2
TrEMBLA0A0D2S2Z80.0A0A0D2S2Z8_GOSRA; Uncharacterized protein
STRINGGorai.006G269200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-92bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]