PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G270800.1

Common Name

B456_006G270800, LOC105800821

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 524aa MW: 58284.8 Da PI: 6.6081

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G270800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	368.3	1e-112	142	522	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaalklf 84 lv+lL++cAeav+ +d++ a+alL++l+ +a g+++qR+a++f+++La rla+ ++ + +++ + +n s+++ a++l Gorai.006G270800.1 142 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASVQPPGTAVGRVQLPPVMNimdimsdSDKKQEAFRLV 232 689**************************************************777766666777777777777888888999999* PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp..egpp...slRiTgvgspesgskeeleetgerLa 166 +e++P +kf+h++aN aIlea+ege+ vH++D++++ qG QW L+q+La+ + +g+p +lRiT+vg ++ +g+ L+ Gorai.006G270800.1 233 YEICPHIKFGHFVANLAILEAFEGESLVHVVDLGMTlglpQGHQWRHLIQSLAAIRggAGKPhctRLRITAVGL----CVDRFDVIGKDLK 319 ******************************98764444889******6553644443568****....********* PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257 +A+++g+++efn+ v+++le+l++e+++v+ +E+l+Vn++lqlh +++es + +vL+++ +lsPk++v+veq+++hn++ Fl rf Gorai.006G270800.1 320 TYAKSMGINLEFNI-VESNLENLKPENIKVSDDEVLVVNSILQLHCVVKESRGALN---SVLQMIHELSPKLLVLVEQDSSHNGPFFLGRF 406 *********9.7****************************88877777...8*************************** PP GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347 +eal+yysa+fdsl+a lp+ + r+k+E++++++ei+n+v+cega+r+erhe++ +Wr+r+++aGF++ pl+ ++qak l + k + Gorai.006G270800.1 407 MEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIVSCEGADRVERHERVDQWRRRMSRAGFQATPLR--LMSQAKQWLGNNKvCE 495 *******************************************************************95..89*******9 PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 gy+v e++g+lvlgW+ +p+v+vS+W+ Gorai.006G270800.1 496 GYTVVEDKGCLVLGWNAKPIVAVSCWK 522 **************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.639	116	503	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-110	142	522	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MSHGFLPNEF QKSDKIDEVI GLDLTLSAMG MTFCSHRFMP LIVDNDDNNW SRRFFEEETR 60 DNKRLKRTIN GGNSDGGMSR NGSNGSLSSL SSLHFRDHIL TYSKRYLAAE AVEEAAAAAA 120 AMAAGYEENG IEEDETAYGM RLVQLLIACA EAVACRDKSH ASALLSELRA NALVFGSSFQ 180 RVASCFVQGL ADRLASVQPP GTAVGRVQLP PVMNIMDIMS DSDKKQEAFR LVYEICPHIK 240 FGHFVANLAI LEAFEGESLV HVVDLGMTLG LPQGHQWRHL IQSLAAIRGG AGKPHCTRLR 300 ITAVGLCVDR FDVIGKDLKT YAKSMGINLE FNIVESNLEN LKPENIKVSD DEVLVVNSIL 360 QLHCVVKESR GALNSVLQMI HELSPKLLVL VEQDSSHNGP FFLGRFMEAL HYYSAIFDSL 420 DAMLPKYDTR RAKMEQFYFA EEIKNIVSCE GADRVERHER VDQWRRRMSR AGFQATPLRL 480 MSQAKQWLGN NKVCEGYTVV EDKGCLVLGW NAKPIVAVSC WKC*

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MSHGFLPNEF QKSDKIDEVI GLDLTLSAMG MTFCSHRFMP LIVDNDDNNW SRRFFEEETR  60
DNKRLKRTIN GGNSDGGMSR NGSNGSLSSL SSLHFRDHIL TYSKRYLAAE AVEEAAAAAA  120
AMAAGYEENG IEEDETAYGM RLVQLLIACA EAVACRDKSH ASALLSELRA NALVFGSSFQ  180
RVASCFVQGL ADRLASVQPP GTAVGRVQLP PVMNIMDIMS DSDKKQEAFR LVYEICPHIK  240
FGHFVANLAI LEAFEGESLV HVVDLGMTLG LPQGHQWRHL IQSLAAIRGG AGKPHCTRLR  300
ITAVGLCVDR FDVIGKDLKT YAKSMGINLE FNIVESNLEN LKPENIKVSD DEVLVVNSIL  360
QLHCVVKESR GALNSVLQMI HELSPKLLVL VEQDSSHNGP FFLGRFMEAL HYYSAIFDSL  420
DAMLPKYDTR RAKMEQFYFA EEIKNIVSCE GADRVERHER VDQWRRRMSR AGFQATPLRL  480
MSQAKQWLGN NKVCEGYTVV EDKGCLVLGW NAKPIVAVSC WKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-55	149	521	26	378	Protein SCARECROW
5b3h_A	9e-56	149	521	25	377	Protein SCARECROW
5b3h_D	9e-56	149	521	25	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012487621.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A0D2T556	0.0	A0A0D2T556_GOSRA; Uncharacterized protein
STRING	Gorai.006G270800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16018	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-77	RGA-like 1

Link Out ? help Back to Top
Phytozome	Gorai.006G270800.1
Entrez Gene	105800821

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]