PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G010200.1

Common Name

B456_007G010200, LOC105801772

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 238aa MW: 25435.4 Da PI: 4.4838

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G010200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.5	1.2e-16	71	119	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa a++ a+++l+g Gorai.007G010200.1 71 VYRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAATAYDVAALALKG 119 59*6..668*****843...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	7.7E-28	71	128	IPR001471	AP2/ERF domain
Pfam	PF00847	3.0E-10	71	119	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.56	71	127	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.96E-18	71	128	IPR016177	DNA-binding domain
SMART	SM00380	9.3E-29	71	135	IPR001471	AP2/ERF domain
CDD	cd00018	1.51E-28	72	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MIQISAILHT NMTESDSSST NVPPKDQPPP PTVPIPDAPP QEQSPKPSST PLVSSKEGVS 60 WNSTSRKLPA VYRGVRSRSG KWVSEIREPR KTTRIWLGTY PTPEMAATAY DVAALALKGP 120 DAELNFPDMV HSYPKVGSTS ATDIRAAAAS AAASRLLPKA VTNTGSSSKN EDTTSTTAME 180 ITCSGQEFID EEELLNFPNL MVDMAGGMLV SPPNWINSPP SDDSPDNSDV DTLWTYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-12	72	133	15	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ224382	0.0	DQ224382.1 Gossypium hirsutum DRE-binding protein 3a (DBP3a) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488508.1	1e-172	PREDICTED: ethylene-responsive transcription factor ERF027-like
Swissprot	Q9CAN9	7e-48	ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBL	A0A0D2T708	1e-170	A0A0D2T708_GOSRA; Uncharacterized protein
STRING	Gorai.007G010200.1	1e-171	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1957	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	6e-34	ERF family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G010200.1
Entrez Gene	105801772

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]