PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G016800.1
Common NameB456_007G016800, LOC105801847
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 218aa    MW: 25547.3 Da    PI: 5.6474
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G016800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.5e-193689356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        ++++ft++q++ Le+ Fe++ ++  +++ + A++lgL+ rqV++WFqNrRa+ k
  Gorai.007G016800.1 36 NKRRFTDDQIRLLESIFESETKLEPKKKLQVARELGLQPRQVSIWFQNRRARLK 89
                        5679************************************************98 PP
2HD-ZIP_I/II115.72.8e-3736124290
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +krr++++q++lLE+ Fe+e+kLep++K ++areLglqprqv +WFqnrRAR k+kq+Ekdy +L+++yd+l+++ e+L++e++ L ++
  Gorai.007G016800.1  36 NKRRFTDDQIRLLESIFESETKLEPKKKLQVARELGLQPRQVSIWFQNRRARLKSKQMEKDYVTLRDNYDKLVSRFEMLKEEKQCLISQ 124
                         79**********************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.3E-181992IPR009057Homeodomain-like
PROSITE profilePS5007117.413191IPR001356Homeobox domain
SMARTSM003897.8E-173495IPR001356Homeobox domain
PfamPF000462.9E-163689IPR001356Homeobox domain
CDDcd000862.36E-143792No hitNo description
Gene3DG3DSA:1.10.10.602.2E-183797IPR009057Homeodomain-like
PRINTSPR000311.6E-56271IPR000047Helix-turn-helix motif
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PRINTSPR000311.6E-57187IPR000047Helix-turn-helix motif
PfamPF021833.9E-1291132IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
METRDHHHPS SNELILQQYS QAPPPGKNNS NNSSSNKRRF TDDQIRLLES IFESETKLEP  60
KKKLQVAREL GLQPRQVSIW FQNRRARLKS KQMEKDYVTL RDNYDKLVSR FEMLKEEKQC  120
LISQKEKLSE MLAESETTGV NNKVSKEGST EHEAEPGSSF KQEDDGVLGL ETEKGHREIE  180
DAVKHGDELM SMDEYRDYDD QFDHLCSRWQ HWLNFWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391RRARLKSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5843091e-151JX584309.1 Gossypium hirsutum clone NBRI_GE17582 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488622.11e-162PREDICTED: homeobox-leucine zipper protein ATHB-7-like
TrEMBLA0A0D2QJS01e-160A0A0D2QJS0_GOSRA; Uncharacterized protein
STRINGGorai.007G016800.11e-161(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17513810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-40homeobox 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]