PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G017500.1

Common Name

B456_007G017500, LOC105801855

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 526aa MW: 58544.3 Da PI: 6.0112

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G017500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.1	3.4e-53	9	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp G+rF+Ptdeel+++yL++kv+gk+ ++ vi+evd++k+ePwdLp+ +vk+++ ew+fF++ d+ky++g+r nrat++gyWkatgkd Gorai.007G017500.1 9 LPIGIRFRPTDEELIDFYLRAKVNGKRKDEIGVIREVDVCKCEPWDLPHlsAVKGRDPEWFFFCPLDRKYPNGNRLNRATEAGYWKATGKD 99 699**********************999899***********4347788888***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++s ++ l+g+kktLvfy+grapkg++t+Wvmheyr Gorai.007G017500.1 100 RKIKS-GSCLIGMKKTLVFYTGRAPKGKRTNWVMHEYRT 137 *.99***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-60	4	160	IPR003441	NAC domain
PROSITE profile	PS51005	56.578	9	160	IPR003441	NAC domain
Pfam	PF02365	6.0E-27	10	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MAVISLNSLP IGIRFRPTDE ELIDFYLRAK VNGKRKDEIG VIREVDVCKC EPWDLPHLSA 60 VKGRDPEWFF FCPLDRKYPN GNRLNRATEA GYWKATGKDR KIKSGSCLIG MKKTLVFYTG 120 RAPKGKRTNW VMHEYRTTLD ELDGTKPGQN PFVICRLFKK QDVTIEDINA DDVDPGASSH 180 TEEVQSEFDG PSVEGGAGKV PDETRPVGLC NEAVAPIFDC NNGGFNACEL EEMAPAQVDL 240 LGEALVQFCD PMMEPLDWKL FSPLHSQIEA EGAPWMFDHV GNSFGGVKFE HGTNENDAEF 300 MNSILNNLDD YYSDDSSSRR NSVIETETPK SMAFGTNGGL YCKPDAEPAQ VLLGTGTANG 360 GAFYNVLNSN GEPSNHVNTA CNVDTAPTIR IRSRAHRIQP DTENFDTQGI ASRRCKLVVH 420 SPRFEAKEHD SKPILPKGVK AMEEYISVDS DAARRTMDEP QIFETSKRDV SRLKSKVPVS 480 EAVSYRCLKR FSARRQHKPF SVIMFRVVAV MLILFVALVS TLNVL*

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MAVISLNSLP IGIRFRPTDE ELIDFYLRAK VNGKRKDEIG VIREVDVCKC EPWDLPHLSA  60
VKGRDPEWFF FCPLDRKYPN GNRLNRATEA GYWKATGKDR KIKSGSCLIG MKKTLVFYTG  120
RAPKGKRTNW VMHEYRTTLD ELDGTKPGQN PFVICRLFKK QDVTIEDINA DDVDPGASSH  180
TEEVQSEFDG PSVEGGAGKV PDETRPVGLC NEAVAPIFDC NNGGFNACEL EEMAPAQVDL  240
LGEALVQFCD PMMEPLDWKL FSPLHSQIEA EGAPWMFDHV GNSFGGVKFE HGTNENDAEF  300
MNSILNNLDD YYSDDSSSRR NSVIETETPK SMAFGTNGGL YCKPDAEPAQ VLLGTGTANG  360
GAFYNVLNSN GEPSNHVNTA CNVDTAPTIR IRSRAHRIQP DTENFDTQGI ASRRCKLVVH  420
SPRFEAKEHD SKPILPKGVK AMEEYISVDS DAARRTMDEP QIFETSKRDV SRLKSKVPVS  480
EAVSYRCLKR FSARRQHKPF SVIMFRVVAV MLILFVALVS TLNVL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-41	8	161	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-41	8	161	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-41	8	161	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-41	8	161	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-40	8	161	19	169	NAC domain-containing protein 19
3swm_B	1e-40	8	161	19	169	NAC domain-containing protein 19
3swm_C	1e-40	8	161	19	169	NAC domain-containing protein 19
3swm_D	1e-40	8	161	19	169	NAC domain-containing protein 19
3swp_A	1e-40	8	161	19	169	NAC domain-containing protein 19
3swp_B	1e-40	8	161	19	169	NAC domain-containing protein 19
3swp_C	1e-40	8	161	19	169	NAC domain-containing protein 19
3swp_D	1e-40	8	161	19	169	NAC domain-containing protein 19
4dul_A	8e-41	8	161	16	166	NAC domain-containing protein 19
4dul_B	8e-41	8	161	16	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.450	0.0	seedling

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48795729	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847226	0.0	KC847226.1 Gossypium hirsutum NAC domain protein NAC49 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488635.1	0.0	PREDICTED: NAC domain-containing protein 62-like
TrEMBL	A0A0D2SCK7	0.0	A0A0D2SCK7_GOSRA; Uncharacterized protein
STRING	Gorai.007G017500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2416	28	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	4e-90	TCV-interacting protein

Link Out ? help Back to Top
Phytozome	Gorai.007G017500.1
Entrez Gene	105801855

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]