PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G038100.1
Common NameB456_007G038100, LOC105802057
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 332aa    MW: 37463.5 Da    PI: 7.8608
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G038100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.73.7e-56131381128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL kkv g +++   +i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke
  Gorai.007G038100.1  13 LPPGFRFHPTDEELIHQYLYKKVLGINFSS-IAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATDSGYWKATGKDKE 102
                         79*************************999.78***************888999************************************* PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++  +++lvg+kktLvfy+grapkg kt+Wvmheyrl
  Gorai.007G038100.1 103 IYM-GKSLVGMKKTLVFYQGRAPKGAKTNWVMHEYRL 138
                         ***.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-6410163IPR003441NAC domain
PROSITE profilePS5100559.11713163IPR003441NAC domain
PfamPF023653.6E-2914138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MANIGEEDDK MDLPPGFRFH PTDEELIHQY LYKKVLGINF SSIAIGEVDL NKSEPWDLPW  60
KAKMGEKEWY FFCVRDRKYP TGLRTNRATD SGYWKATGKD KEIYMGKSLV GMKKTLVFYQ  120
GRAPKGAKTN WVMHEYRLDG KFSIQNLPKT AKNEWVICRV FQKSSDGKKI PISSLVKASC  180
LSNELGPATG LPPLMDSSPY NGGKSEPVFA DSTYVPCFSN PIGSQTNQQI TIDHNFNYRT  240
LHVSSNPCHV LPQNPFYAAE FESLGSVQEQ SMLRTLIENH GSKVQAEREI VRKPEMLFVS  300
NLESGKKPFD DQHAPSSSSA GPVDLDCFWH Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-571016914171NO APICAL MERISTEM PROTEIN
1ut4_B7e-571016914171NO APICAL MERISTEM PROTEIN
1ut7_A7e-571016914171NO APICAL MERISTEM PROTEIN
1ut7_B7e-571016914171NO APICAL MERISTEM PROTEIN
3swm_A7e-571016917174NAC domain-containing protein 19
3swm_B7e-571016917174NAC domain-containing protein 19
3swm_C7e-571016917174NAC domain-containing protein 19
3swm_D7e-571016917174NAC domain-containing protein 19
3swp_A7e-571016917174NAC domain-containing protein 19
3swp_B7e-571016917174NAC domain-containing protein 19
3swp_C7e-571016917174NAC domain-containing protein 19
3swp_D7e-571016917174NAC domain-containing protein 19
4dul_A7e-571016914171NAC domain-containing protein 19
4dul_B7e-571016914171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472140.0KC847214.1 Gossypium hirsutum NAC domain protein NAC37 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488927.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-133NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0D2SDL10.0A0A0D2SDL1_GOSRA; Uncharacterized protein
STRINGGorai.007G038100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2502034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-135NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]