PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G038100.2

Common Name

B456_007G038100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 269aa MW: 30193.2 Da PI: 8.9259

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G038100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.2	2.3e-34	2	75	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke++ +++lvg+kktLvfy+grapkg kt+Wvmheyrl Gorai.007G038100.2 2 GEKEWYFFCVRDRKYPTGLRTNRATDSGYWKATGKDKEIYM-GKSLVGMKKTLVFYQGRAPKGAKTNWVMHEYRL 75 579************************************.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.634	1	100	IPR003441	NAC domain
SuperFamily	SSF101941	9.81E-40	2	100	IPR003441	NAC domain
Pfam	PF02365	2.3E-16	6	75	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MGEKEWYFFC VRDRKYPTGL RTNRATDSGY WKATGKDKEI YMGKSLVGMK KTLVFYQGRA 60 PKGAKTNWVM HEYRLDGKFS IQNLPKTAKN EWVICRVFQK SSDGKKIPIS SLVKASCLSN 120 ELGPATGLPP LMDSSPYNGG KSEPVFADST YVPCFSNPIG SQTNQQITID HNFNYRTLHV 180 SSNPCHVLPQ NPFYAAEFES LGSVQEQSML RTLIENHGSK VQAEREIVRK PEMLFVSNLE 240 SGKKPFDDQH APSSSSAGPV DLDCFWHY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-34	1	106	68	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-34	1	106	68	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-34	1	106	68	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-34	1	106	68	171	NO APICAL MERISTEM PROTEIN
4dul_A	7e-34	1	106	68	171	NAC domain-containing protein 19
4dul_B	7e-34	1	106	68	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847214	0.0	KC847214.1 Gossypium hirsutum NAC domain protein NAC37 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488927.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	8e-97	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0D2P2J4	0.0	A0A0D2P2J4_GOSRA; Uncharacterized protein
STRING	Gorai.007G038100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	3e-99	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Gorai.007G038100.2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]