PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G041600.2
Common NameB456_007G041600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 507aa    MW: 55479.4 Da    PI: 5.2485
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G041600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.81.6e-12166188426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e+C ++++tG Ck+G++CkF+H+
  Gorai.007G041600.2 166 ENCAYYMKTGLCKFGSNCKFNHP 188
                         89********************9 PP
2zf-CCCH30.46.4e-10208233227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++ +C++++rtG Ck+G  C+++H++
  Gorai.007G041600.2 208 GQTECKYYLRTGGCKFGKACRYNHSR 233
                         6789********************95 PP
3zf-CCCH39.31.1e-12254278226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C++++r+G CkyG++C+F+H+
  Gorai.007G041600.2 254 GEKECPYYMRNGSCKYGANCRFNHP 278
                         6789********************9 PP
4zf-CCCH26.79.6e-09392418127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f++tG Ck+ ++Ck++H++
  Gorai.007G041600.2 392 PGQPECSYFLKTGDCKFKSNCKYHHPK 418
                         5789*********************96 PP
5zf-CCCH36.11.1e-11439464227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C++++r+G+Ck+G+ CkF H++
  Gorai.007G041600.2 439 DQSICSHYSRYGICKFGPACKFDHSM 464
                         6789********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.126162190IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5162189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-6163190IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10166188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5168187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652206234IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-5206233IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7208233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5209234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4212233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004252280IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6252279IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10254278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6254280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5258277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333391419IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4391418IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-6393418IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5395421IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6435463IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4437464IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305437465IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-9439463IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4441464IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGWLNMSWKP WLRFGSSFQA FLVLKCGFTM SQSEEAPISD TTALADSALN TLGHLSPDSD  60
PTPNPDASPT PSDLNRAAEG TGHDESNLEQ QLQDLDLKEE VAAAVAAAET KDDGERKGDN  120
DYNEADAGAA EEKEDEEEKN ENENDGENGK RFEGVRSHFP VRPDAENCAY YMKTGLCKFG  180
SNCKFNHPVR RKNQENLKEN DESTEKPGQT ECKYYLRTGG CKFGKACRYN HSRAKSSTDP  240
ILELNFLGLP IRQGEKECPY YMRNGSCKYG ANCRFNHPDP TTTGACDPPA AYGNGGSVSS  300
QAASQVNIAS WSSPRALNET ATATFMPIMF SPTPGVPPPN PEWNGYQATI YPPPERILHP  360
TPAYVMSSPS TETTVYTQNQ PQMVVDEFPV RPGQPECSYF LKTGDCKFKS NCKYHHPKNR  420
LAKPAPCALS DKGLPLRPDQ SICSHYSRYG ICKFGPACKF DHSMQAAPST TVSELEQPPP  480
FSHSAPLEQT GIAGSNGTDT AVQQHV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489000.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
SwissprotQ9STM41e-135C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0D2QL680.0A0A0D2QL68_GOSRA; Uncharacterized protein
STRINGGorai.007G041600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-135C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]