PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G043400.1
Common NameB456_007G043400, LOC105802115
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25445.1 Da    PI: 10.4684
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G043400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.83.3e-291868151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien +nrqvtfskRrng+lKKA+ELS+LCdaeva++ifss+gk+y ++s
  Gorai.007G043400.1 18 KRIENPTNRQVTFSKRRNGLLKKAFELSILCDAEVALLIFSSSGKVYQFAS 68
                        79***********************************************86 PP
2K-box66.78e-239418113100
               K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                         + e ++ e++ Lk+ i++L+  ++hl Ged+  L +++L+qLe+qL+ +++++Rs+K +++ ++   l+++ k+lqeen +L+k+l+e
  Gorai.007G043400.1  94 TREFWRSEIDELKRSINTLEARLKHLSGEDILALGMRDLKQLERQLKIGVERVRSRKRRIVSDHATLLKRRHKQLQEENSRLHKRLKE 181
                         5689********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-411069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.1091070IPR002100Transcription factor, MADS-box
CDDcd002651.16E-391179No hitNo description
SuperFamilySSF554552.75E-321185IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001266IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-311232IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261966IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-313247IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-314768IPR002100Transcription factor, MADS-box
PfamPF014865.8E-2194179IPR002487Transcription factor, K-box
PROSITE profilePS5129712.8695185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDDSWVLKEM GRGKVELKRI ENPTNRQVTF SKRRNGLLKK AFELSILCDA EVALLIFSSS  60
GKVYQFASHD MDRTVAKYRR EVGLPDSSNP QFRTREFWRS EIDELKRSIN TLEARLKHLS  120
GEDILALGMR DLKQLERQLK IGVERVRSRK RRIVSDHATL LKRRHKQLQE ENSRLHKRLK  180
ELQDGNISSG LVGENACTMF HQRIVHDEDF HNETGLPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-251078169MEF2 CHIMERA
6byy_B5e-251078169MEF2 CHIMERA
6byy_C5e-251078169MEF2 CHIMERA
6byy_D5e-251078169MEF2 CHIMERA
6bz1_A5e-251078169MEF2 CHIMERA
6bz1_B5e-251078169MEF2 CHIMERA
6bz1_C5e-251078169MEF2 CHIMERA
6bz1_D5e-251078169MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364520.0HM236452.1 Gossypium hirsutum MADS36 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489028.11e-159PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
TrEMBLA0A0D2QLE21e-158A0A0D2QLE2_GOSRA; Uncharacterized protein
STRINGGorai.007G043400.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.13e-49MIKC_MADS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]