PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G044400.1

Common Name

B456_007G044400, LOC105802127

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 334aa MW: 37299.9 Da PI: 8.0083

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G044400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	9.8e-10	168	215	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L++l+P + +k Ka +L + ++Y++sLq Gorai.007G044400.1 168 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 215 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.16E-11	162	219	No hit	No description
SuperFamily	SSF47459	2.49E-17	162	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.993	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-17	164	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-7	168	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.7E-11	170	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MATYSFQSHP FLLDSIFLPN TSTTKVSGLV EEGNIINPNC FPQFYQDSPV GSMLHQSSCL 60 DHSSNEPSTV TKKQSTEDDS STAVDKLESG EQVTQKKRTR NGTTSNSAQF KGAKEGKTKK 120 QKKCNDGLKN EKKGCNSKAD KKDQEKSTEQ PPTGYIHVRA RRGQATDSHS LAERVRREKI 180 SERMKTLQRL VPGCDKVTGK ALMLDEIINY VQSLQNQVEF LSMKLASLSP TFYDFGVDLE 240 TLMIRPERVS STETSPLPMP CPQQCNPIQT TIAPSHINYP LLDVSTALFL QQGLRPNLFS 300 HSQDNGSVLW DVEDQRQKIF NSSQLNDNLC FFH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.3358	0.0	seedling

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489044.1	0.0	PREDICTED: transcription factor bHLH137-like
TrEMBL	A0A0D2T8U8	0.0	A0A0D2T8U8_GOSRA; Uncharacterized protein
STRING	Gorai.007G044400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8796	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	9e-63	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G044400.1
Entrez Gene	105802127

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]