PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G051100.1
Common NameB456_007G051100, LOC105801430
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 207aa    MW: 24043.2 Da    PI: 9.0076
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G051100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.8e-2049103357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         k++++++eq++ Le +F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Gorai.007G051100.1  49 KKRKLSQEQVDLLEHHFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 103
                         56699************************************************95 PP
2HD-ZIP_I/II116.91.2e-3749139292
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkr+ls+eqv lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE+ +++Lk+ + +++ e++rLe+ev++L+e+l 
  Gorai.007G051100.1  49 KKRKLSQEQVDLLEHHFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEGFSKLKSDHHEVVLEKCRLESEVTKLKEKLC 139
                         9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.02244104IPR001356Homeobox domain
SuperFamilySSF466892.01E-1847113IPR009057Homeodomain-like
SMARTSM003891.2E-1947108IPR001356Homeobox domain
CDDcd000861.23E-1549105No hitNo description
PfamPF000461.7E-1749103IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-2151110IPR009057Homeodomain-like
PRINTSPR000311.3E-57584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000311.3E-584100IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MNKLEDQMAF ISQIYLGGYP QVAPQQAESK PRRRRNKNKG GENNLSMTKK RKLSQEQVDL  60
LEHHFGNEHK LESERKDRLA SELGLDPRQV AVWFQNRRAR WKNKKLEEGF SKLKSDHHEV  120
VLEKCRLESE VTKLKEKLCE AKKEIQRLGE RVDRGSSNSP SSSLTMEAMD TPFLGEFGLE  180
GYDNVFYIAE NSYNNIPGME WMNMYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13250RRRNKNKGGENNLSMTKKR
23251RRRNKNKGGENNLSMTKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488188.11e-153PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232081e-69ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0D2P3861e-152A0A0D2P386_GOSRA; Uncharacterized protein
STRINGGorai.007G051100.11e-152(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-59homeobox protein 40
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]