PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G057800.1

Common Name

B456_007G057800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 303aa MW: 34392.8 Da PI: 6.521

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G057800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	124	170	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ri ++f L l+P + kK +K ++L A+eY+k+Lq Gorai.007G057800.1 124 EHVIAERKRRERISQSFLSLAALIPGL-----KKKDKNSVLGDAIEYLKQLQ 170 699*********************9.....89***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.627	120	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-10	124	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-15	124	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-14	125	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.08E-11	125	171	No hit	No description
SMART	SM00353	7.3E-12	126	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEDPTFFTQY ETTNPIEYPF DDFNFQSESY SSYPRINGSS INEASHHQLD VFEKPPLKQL 60 KTNNWSSCIS PQKASFSSSS SHIISFNNSS SSLLYYGVDC DLKPKNEVSK MVGSLTRVPL 120 LAQEHVIAER KRRERISQSF LSLAALIPGL KKKDKNSVLG DAIEYLKQLQ ERKARLEEQV 180 AKRTVESVKF VKKTTQFYAQ DDQTSSYDES FDTQSKNPFP DIEARVSNKD VLIRIHCETN 240 KGCISNIINE VEKLHLSVLN SNALPFGQAT LYITIVAQME DEFSMTLRDL VKTLREGLLS 300 FM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	133	ERKRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX580413	2e-87	JX580413.1 Gossypium hirsutum clone NBRI_GE12835 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488189.1	0.0	PREDICTED: transcription factor NAI1-like
TrEMBL	A0A0D2SER1	0.0	A0A0D2SER1_GOSRA; Uncharacterized protein
STRING	Gorai.007G057800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	3e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G057800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]