PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G059100.1

Common Name

B456_007G059100, LOC105802260

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 211aa MW: 24069.2 Da PI: 11.1718

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G059100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	6e-10	49	94	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+ +Er RR+ri f+ Lr++lP++ K++Ka++L ++v+ +++L Gorai.007G059100.1 49 KHKTAERHRRKRISRQFDMLRTILPNL-----IKMDKASVLGETVRQVREL 94 69**********************9.....6**********988877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.973	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.14E-7	48	99	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-12	49	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.23E-12	49	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-7	49	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-10	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	4.7E-4	134	182	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MVRLKQLEQD IQQHLRRYRA SISTIDFSFK SLKKVTKPKA EANIANALKH KTAERHRRKR 60 ISRQFDMLRT ILPNLIKMDK ASVLGETVRQ VRELKNRVKE MKGASDGSLE CVLPGELNSL 120 SFGFSEKDGN LVKATFSCDD RPELIADLTR EIRKVSGTVV RAEMVFIGGR NKSVLWIKGF 180 SGNERMGMLK RALKMAIDIP KKNWNPRFNI *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489249.1	1e-153	PREDICTED: transcription factor bHLH131-like
TrEMBL	A0A0D2S7N7	1e-152	A0A0D2S7N7_GOSRA; Uncharacterized protein
STRING	Gorai.007G059100.1	1e-153	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13939	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	9e-32	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G059100.1
Entrez Gene	105802260

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]