PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G065300.2

Common Name

B456_007G065300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 289aa MW: 31353 Da PI: 4.2017

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G065300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	33.7	1.1e-10	6	39	1	35
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevik 35 lppGfrFhPtd elv++yLk+kv g+kl l +vi+ Gorai.007G065300.2 6 LPPGFRFHPTDVELVMYYLKRKVLGQKLLL-NVIA 39 79***********************99766.5555 PP
2	NAM	40.1	1.1e-12	40	75	94	129
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 + +ge+vg+ ktLvf+kg+ap+g +tdWvmheyrle Gorai.007G065300.2 40 KYNGEVVGMIKTLVFHKGKAPRGDRTDWVMHEYRLE 75 448999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	15.509	1	97	IPR003441	NAC domain
SuperFamily	SSF101941	1.16E-27	3	97	IPR003441	NAC domain
Pfam	PF02365	6.4E-7	7	31	IPR003441	NAC domain
Pfam	PF02365	7.5E-5	46	74	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MGKNTLPPGF RFHPTDVELV MYYLKRKVLG QKLLLNVIAK YNGEVVGMIK TLVFHKGKAP 60 RGDRTDWVMH EYRLEEKILA DRGPVQDMYM LYVVFKKDGL GPRNGSQYGA PFKEEEWSDD 120 EQADVPGAGS LCGLSTVAVG GDNSSCVPES VCVGPSVESS GWCTQPSMGH TNGDVNVTTA 180 IDTNAYAAPT CADAPEVPVV AVAEDVPTLL EAPQPALVPQ DQESNDNVLS MLECFFEEDA 240 FGTHEGLRRG NATDSSFKDT PVSDEDDISS LLASFTDVDN SNNWSYPF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847245	0.0	KC847245.1 Gossypium hirsutum NAC domain protein NAC68 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313981.1	0.0	NAC domain-containing protein 82-like
Refseq	XP_012489350.1	0.0	PREDICTED: NAC domain-containing protein 78-like
TrEMBL	A0A0D2T9W9	0.0	A0A0D2T9W9_GOSRA; Uncharacterized protein
STRING	Gorai.007G065300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	9e-37	NAC domain containing protein 103

Link Out ? help Back to Top
Phytozome	Gorai.007G065300.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]