PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G069400.1
Common NameB456_007G069400, LOC105802368
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 227aa    MW: 25230.7 Da    PI: 8.2744
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G069400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.54.2e-3322117195
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         aCaaCk++r+kC ++C+lapyfpa++ ++f++vhk+FG+sn +k+++++ ++e+r+++++sl++eA ++++dPv G +g ++k+ ++l+  
  Gorai.007G069400.1  22 ACAACKHQRKKCDENCILAPYFPADKCREFQAVHKVFGVSNATKIVRNAnSDEDRKKVADSLIWEAFCWQKDPVLGPYGDYRKIYEELSLY 112
                         7**********************************************9945566*******************************999988 PP

              DUF260  91 kaela 95 
                         k++ +
  Gorai.007G069400.1 113 KKQSQ 117
                         87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.01621123IPR004883Lateral organ boundaries, LOB
PfamPF031959.7E-3222118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MQRETSNGVA AAAAAASRVH PACAACKHQR KKCDENCILA PYFPADKCRE FQAVHKVFGV  60
SNATKIVRNA NSDEDRKKVA DSLIWEAFCW QKDPVLGPYG DYRKIYEELS LYKKQSQMML  120
LQDHDHQPTH PVFKMGPAHA VTPTKRLIDV KGAISDATLR CYNPDVDGNS LVGFSGYPYP  180
PQSEKPVQEK AIHNATTIVP LQYYASADVG FMNGKTLEST RWDNIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-162311512103LOB family transfactor Ramosa2.1
5ly0_B6e-162311512103LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489419.11e-172PREDICTED: LOB domain-containing protein 4-like
TrEMBLA0A0D2TAC41e-170A0A0D2TAC4_GOSRA; Uncharacterized protein
STRINGGorai.007G069400.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105392635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.14e-39LOB domain-containing protein 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]