PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G075300.1
Common NameB456_007G075300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 384aa    MW: 43365.5 Da    PI: 6.117
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G075300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.83.8e-31511931128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                         lp G++F+P+d el+ e+L++k+   +      ++++  +++e  +i++++P++Lp  vk++ ++++fF+++ ++yatg+rk+r       
  Gorai.007G075300.1  51 LPIGLKFDPSDIELL-EHLAAKCGIGDlkphpfIDEFIpTLNEDqGICYTHPQNLP-GVKKDGSSIHFFHQTINAYATGQRKRRRiqnrhs 139
                         699************.99****988886665442222222333337**********.67788899******************97567766 PP

                 NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            ++ +W++tgk+k+v++ +g  +g kk++v+y  ++ra+k+ek++Wvmh+y+l
  Gorai.007G075300.1 140 tiEEHVRWHKTGKTKPVIE-NGVRKGWKKIMVLYkrSNRAHKPEKSNWVMHQYHL 193
                         6555899************.999***********5546999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3536212IPR003441NAC domain
PROSITE profilePS5100529.31951212IPR003441NAC domain
PfamPF023651.4E-1252193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
SRSWLIDSRS IAKKVKNAIQ ITDPDCGANR ECPNCHCRID NSDVSPQWPG LPIGLKFDPS  60
DIELLEHLAA KCGIGDLKPH PFIDEFIPTL NEDQGICYTH PQNLPGVKKD GSSIHFFHQT  120
INAYATGQRK RRRIQNRHST IEEHVRWHKT GKTKPVIENG VRKGWKKIMV LYKRSNRAHK  180
PEKSNWVMHQ YHLGAEEVEV GGEYVVSKIS YQQPKQTDKN DGVTRMEDSD NSMIRASPRT  240
PKTMTQSPPR PWESMIYEDD IDEKVHQESK FAAQGSNLPI QGVECEDHLE YPLWLAGESQ  300
AAVNSEMNCL DNSSLQVKNS VKDRVSYAVH DPGTMEMSAG NKDTCTCGIS ELENLEFDTP  360
PDVQLSDLQF DSQESISSWL DQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128132RKRRR
2129133KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488200.10.0PREDICTED: NAC domain-containing protein 8-like isoform X3
TrEMBLA0A0D2P4Q80.0A0A0D2P4Q8_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.007G075300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50452651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.14e-91NAC domain containing protein 85
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]