PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G086600.1
Common NameB456_007G086600, LOC105802547
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 302aa    MW: 33222.3 Da    PI: 6.3621
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G086600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-18139193256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq  +Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  Gorai.007G086600.1 139 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTK 193
                         788899***********************************************98 PP
2HD-ZIP_I/II126.21.4e-40139228191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+ +LEe+F+e+++L+p++K +la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l
  Gorai.007G086600.1 139 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVQELR-AL 228
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.8E-321108IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.4E-18114196IPR009057Homeodomain-like
SuperFamilySSF466895.56E-19122196IPR009057Homeodomain-like
PROSITE profilePS5007117.006135195IPR001356Homeobox domain
SMARTSM003893.6E-15137199IPR001356Homeobox domain
PfamPF000468.2E-16139193IPR001356Homeobox domain
CDDcd000866.84E-15139196No hitNo description
PROSITE patternPS000270170193IPR017970Homeobox, conserved site
SMARTSM003401.6E-25195238IPR003106Leucine zipper, homeobox-associated
PfamPF021837.0E-12195229IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDDKDDGLGL SLSLGCAQNQ PSLKLNLMPL ASPCMQNLQQ RNIWNELFQS SVFVIDRMHA  60
DGQLETRSVA GGIDVNQAPA LAECEEEDGV SSPNSTVSSI GGKRNERDPV CDETEAERPS  120
CSRSSDDEDG GGAGDDASRK KLRLSKEQSL VLEETFKEHS TLNPKQKLAL AMQLNLRPRQ  180
VEVWFQNRRA RTKLKQTEVD CEYLKRCCDN LTEENRRLQK EVQELRALKL SPQLYTHINP  240
PTTLTMCPSC ERVAIASSSS SSLAASSAPN SKHQRPVPAS SWAALPLPVT HRPFNAPASR  300
P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143SRKKLRL
2187195RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489700.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X1
SwissprotP466021e-101HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0D2SGL10.0A0A0D2SGL1_GOSRA; Uncharacterized protein
STRINGGorai.007G086600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.18e-90homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  4. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]