PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G086600.5
Common NameB456_007G086600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 183aa    MW: 20016.2 Da    PI: 4.5369
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G086600.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.7e-18130182254
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         rk+ +++keq  +Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+
  Gorai.007G086600.5 130 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRAR 182
                         788899*********************************************98 PP
2HD-ZIP_I/II77.91.7e-25130182153
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 
                         +kk+rlskeq+ +LEe+F+e+++L+p++K +la +L+l+prqv+vWFqnrRAR
  Gorai.007G086600.5 130 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRAR 182
                         69**************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.1E-31199IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.2E-18112180IPR009057Homeodomain-like
SuperFamilySSF466898.98E-18113182IPR009057Homeodomain-like
PROSITE profilePS5007116.925126182IPR001356Homeobox domain
SMARTSM003892.2E-8128182IPR001356Homeobox domain
CDDcd000866.30E-15130182No hitNo description
PfamPF000461.7E-15130182IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDDKDDGLGL SLSLGCAQNQ PSLKLNLMPL ASPCMQNLQQ RNIWNELFQS SDGQLETRSV  60
AGGIDVNQAP ALAECEEEDG VSSPNSTVSS IGGKRNERDP VCDETEAERP SCSRSSDDED  120
GGGAGDDASR KKLRLSKEQS LVLEETFKEH STLNPKQKLA LAMQLNLRPR QVEVWFQNRR  180
AR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134SRKKLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489701.11e-130PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X2
SwissprotP466025e-58HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0D2TBI21e-129A0A0D2TBI2_GOSRA; Uncharacterized protein
STRINGGorai.007G086600.11e-114(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.19e-48homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  4. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]