PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G087100.1
Common NameB456_007G087100, LOC105802555
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 246aa    MW: 27277 Da    PI: 5.9086
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G087100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1875124255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Gorai.007G087100.1  75 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYHTAEMAARAHDVAALAIKG 124
                         69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-3675138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-3275133IPR001471AP2/ERF domain
PROSITE profilePS5103223.16975132IPR001471AP2/ERF domain
PfamPF008474.0E-1275124IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2175133IPR016177DNA-binding domain
PRINTSPR003672.3E-107687IPR001471AP2/ERF domain
CDDcd000182.18E-3176132No hitNo description
PRINTSPR003672.3E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MERDHTNIEN DAHHNMLISS SSVTSTTATA SPSSMIYSFS DSDHQNERSC SKNSDNEKKK  60
RQRSSDIGEG KKHPTYRGVR MRSWGKWVSE IREPRKKSRI WLGTYHTAEM AARAHDVAAL  120
AIKGRSAYLN FPQLAKLLPR PASTSPKDVQ AAASLAAAST FLDTRRCNIE AEAEASKEDE  180
VPPSNLSQAS SSPSIDDDDT LFDLPDLMID VTDRSDGFGS YSSTWQICAV DAGFRIEEPF  240
SWDYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1868133773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15762KKKRQR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489710.10.0PREDICTED: ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ71e-66ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D2P5L80.0A0A0D2P5L8_GOSRA; Uncharacterized protein
STRINGGorai.007G087100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.14e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]