PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G087900.2

Common Name

B456_007G087900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 406aa MW: 44062.1 Da PI: 7.677

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G087900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	68.3	1.5e-21	186	247	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++ l +akeyhrrhkvCe+hskap+v+v g+eqrfCqqCsr rrLa+hnerrrk + Gorai.007G087900.2 186 RCQVEGCDVALVNAKEYHRRHKVCEMHSKAPKVVVLGIEQRFCQQCSR---------------RRLAGHNERRRKGS 247 6*********************************************95...............88999999999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.9E-25	179	234	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	21.674	184	246	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.62E-26	185	250	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-18	187	255	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MENGGSMYLG SKGQTGNNSI NLAWDLGELN PTSTRFDWGG NDNINAFNLY ASTTSTTSSS 60 RAEMISSPSS TLPVANTAAP ALMFLPHHVN ATLTHHLNQE HSLYAGDGSH MHPDPHLVCL 120 KLGKRHYFED STSLTERHLV GGFSIGKKGN PYYNNNIGCG SGGVSGGVEP SSPIAVMGSP 180 ASTVPRCQVE GCDVALVNAK EYHRRHKVCE MHSKAPKVVV LGIEQRFCQQ CSRRRLAGHN 240 ERRRKGSHDS ASRNSAQDAK LKTGRFPYHL SLPKGRALSL LSSRADSWIS PSDLSSRSST 300 ALQELIAENR AAVLARQLVL DRGWQLNHRG MEDLGVFSST TAEQHSLLPE PPQGWEKFQE 360 TGAELTLNLM QASSSASGMF VRGKSEDEEQ ECSELWNSLQ GTHVV*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MENGGSMYLG SKGQTGNNSI NLAWDLGELN PTSTRFDWGG NDNINAFNLY ASTTSTTSSS  60
RAEMISSPSS TLPVANTAAP ALMFLPHHVN ATLTHHLNQE HSLYAGDGSH MHPDPHLVCL  120
KLGKRHYFED STSLTERHLV GGFSIGKKGN PYYNNNIGCG SGGVSGGVEP SSPIAVMGSP  180
ASTVPRCQVE GCDVALVNAK EYHRRHKVCE MHSKAPKVVV LGIEQRFCQQ CSRRRLAGHN  240
ERRRKGSHDS ASRNSAQDAK LKTGRFPYHL SLPKGRALSL LSSRADSWIS PSDLSSRSST  300
ALQELIAENR AAVLARQLVL DRGWQLNHRG MEDLGVFSST TAEQHSLLPE PPQGWEKFQE  360
TGAELTLNLM QASSSASGMF VRGKSEDEEQ ECSELWNSLQ GTHVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-18	178	245	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622332	0.0	KJ622332.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL24) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489722.1	0.0	PREDICTED: squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	5e-45	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A0D2P5N3	0.0	A0A0D2P5N3_GOSRA; Uncharacterized protein
STRING	Gorai.007G087900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	5e-25	squamosa promoter binding protein-like 9

Link Out ? help Back to Top
Phytozome	Gorai.007G087900.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]