PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G091600.1

Common Name

B456_007G091600, LOC105802602

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 187aa MW: 20412.2 Da PI: 8.8172

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G091600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.7	5.3e-40	9	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk++Gasn +k+l+++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq+ +l Gorai.007G091600.1 9 PCGACKFLRRKCVKGCIFAPYFDSDQgMAHFAAVHKVYGASNASKMLQRIPVHKRLDAVVTLCYEALARVRDPVYGCVGHLFTLQQQVVNL 99 7*********************9988*********************************************************** PP DUF260 91 kaelallkee 100 +aela+++++ Gorai.007G091600.1 100 QAELAYTQAR 109 ***99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.112	8	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.6E-39	9	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MSGNNGGGPC GACKFLRRKC VKGCIFAPYF DSDQGMAHFA AVHKVYGASN ASKMLQRIPV 60 HKRLDAVVTL CYEALARVRD PVYGCVGHLF TLQQQVVNLQ AELAYTQARL STLQRHPPSS 120 SLIGSDLMSS SNMSTHFDPP QQTSVGLSSF PNSFDQVAEN EQLQVLTREF VSRYLPGVRF 180 HPSTST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-37	5	110	7	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-37	5	110	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269\|PubMed:12068116}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00313	DAP	Transfer from AT2G45410	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489773.1	1e-138	PREDICTED: LOB domain-containing protein 19
Swissprot	O22132	2e-67	LBD19_ARATH; LOB domain-containing protein 19
TrEMBL	A0A0D2SGW6	1e-136	A0A0D2SGW6_GOSRA; Uncharacterized protein
STRING	Gorai.007G091600.1	1e-137	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	4e-68	LOB domain-containing protein 19

Link Out ? help Back to Top
Phytozome	Gorai.007G091600.1
Entrez Gene	105802602

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]