PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G092400.2
Common NameB456_007G092400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 436aa    MW: 47693.6 Da    PI: 9.973
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G092400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.78.4e-23130175146
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 
                         d+epgrCrRtDGKkWRCs++v++ +k+CE H+hrg+ rsrk++e+s
  Gorai.007G092400.2 130 DPEPGRCRRTDGKKWRCSKNVIPYQKYCEQHMHRGCRRSRKPVETS 175
                         79****************************************9975 PP
2WRC65.76.5e-21327366242
                 WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                          epgrCrRtDGK+WRCsr+v++++k+C rH+hrg  r++++
  Gorai.007G092400.2 327 LEPGRCRRTDGKRWRCSRDVIPDQKYCARHMHRGA-RKQTE 366
                         59********************************5.55544 PP
3QLQ32.82.1e-126195337
                 QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                        FT aQl+ L  Q l++Ky+a + +vP +L+ +i+k
  Gorai.007G092400.2 61 FTTAQLHDLQLQTLIFKYIAGGIQVPVNLVIPIWK 95
                        *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5166615.2086095IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.5E-86194IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.906130174IPR014977WRC domain
PfamPF088794.0E-18131173IPR014977WRC domain
PROSITE profilePS5166721.734326370IPR014977WRC domain
PfamPF088797.9E-18328365IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MFLILGGGGS GAQERLEGKG RTVKMEEEET EKGGSPSIKL GLGIDGTTSE KPVKKHGKCV  60
FTTAQLHDLQ LQTLIFKYIA GGIQVPVNLV IPIWKSVASS FGSARGCIYE RYPSFVGVSP  120
QALDYRNMAD PEPGRCRRTD GKKWRCSKNV IPYQKYCEQH MHRGCRRSRK PVETSQSALP  180
DSTSSKFSIR LSENSKNLPT PVSFQYTNPF SCNTSTSHGT TAIESNNVCS NRNSISINAA  240
TSGTIIATMK NDNKNDPKRN KNVTNTSEKG EEKLSVSNNN TIKRSSKSGN KATVGNNISP  300
SVGFSPKSVL QVLGNSSSRA YKNEIELEPG RCRRTDGKRW RCSRDVIPDQ KYCARHMHRG  360
ARKQTEVSQP VAVPSVGECR PPSRLTTAYK AACPALSTSL SISIPRSQYI AEDEKSTSSS  420
SETTISDTND YCLRE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489795.10.0PREDICTED: LOW QUALITY PROTEIN: growth-regulating factor 9
TrEMBLA0A0D2QPC00.0A0A0D2QPC0_GOSRA; Uncharacterized protein
STRINGGorai.007G092400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.17e-45growth-regulating factor 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]