PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G113200.3

Common Name

B456_007G113200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 398aa MW: 45449.8 Da PI: 7.3579

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G113200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.3e-14	226	277	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Gorai.007G113200.3 226 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 277 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.15E-12	224	281	No hit	No description
PROSITE profile	PS50888	16.126	225	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.85E-17	225	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-15	226	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-11	226	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-11	231	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MLVTERGTQK EKKNEFRAFT STTAKLFMER PQGPINPYFL GEHLEVECLE QGFISCERLK 60 LGEEEEEAHF SIPSFEEKMP FLQMLQSVES PQLFAFKEPN FQTLLRLQHM KKPWELNTNP 120 FIPEMETQVQ ALELESCVTH ETVLDLHSPV KSETKELKKS PPSSSCVEVL SSGSNQHQPK 180 SDNCSREPNL GSSSQKIFTK SPPITRERRK RKRTKAAKNK EEVESQRMTH IAVERNRRRQ 240 MNDYLNSLRS LMPPCYIQRG DQASIIAGAI DFVKELEQLL QSLEAQKRTR KVHESNNSMS 300 NPAMEIHQQE YENGSEDGHC GEEVKAESKT GAAEVEVNVI HNHVNLKIQC SRRAGQLIQA 360 IVTLETLRLT VLHLNITTSR ASVLYSFNLK VILFVLF*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MLVTERGTQK EKKNEFRAFT STTAKLFMER PQGPINPYFL GEHLEVECLE QGFISCERLK  60
LGEEEEEAHF SIPSFEEKMP FLQMLQSVES PQLFAFKEPN FQTLLRLQHM KKPWELNTNP  120
FIPEMETQVQ ALELESCVTH ETVLDLHSPV KSETKELKKS PPSSSCVEVL SSGSNQHQPK  180
SDNCSREPNL GSSSQKIFTK SPPITRERRK RKRTKAAKNK EEVESQRMTH IAVERNRRRQ  240
MNDYLNSLRS LMPPCYIQRG DQASIIAGAI DFVKELEQLL QSLEAQKRTR KVHESNNSMS  300
NPAMEIHQQE YENGSEDGHC GEEVKAESKT GAAEVEVNVI HNHVNLKIQC SRRAGQLIQA  360
IVTLETLRLT VLHLNITTSR ASVLYSFNLK VILFVLF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	212	RRKRKR
2	226	237	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490186.1	0.0	PREDICTED: transcription factor bHLH67-like isoform X1
TrEMBL	A0A0D2SBJ7	0.0	A0A0D2SBJ7_GOSRA; Uncharacterized protein
STRING	Gorai.007G113200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	2e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G113200.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]