PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G113300.6

Common Name

B456_007G113300, LOC105802851

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 235aa MW: 27095.8 Da PI: 6.8673

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G113300.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.8e-10	200	229	1	30
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +r++h ++Er+RR+++N+ ++ Lr+l+P++ Gorai.007G113300.6 200 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC 229 79**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.67E-9	192	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.21E-7	198	233	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.3E-9	198	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.379	199	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.4E-8	200	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MERLQGPINP YFLGEHLEVE CLEQGFISCE RLKLGEEEEE EAHFSIPSFE EKMPFLQMLQ 60 SVESPQLFAF KEPNFQTLLR LQHMKKPWEL NTNPFIPEME TQVQALELES CVTHETVLDL 120 HSPVKSETKE LKKSPPSSSC AEVLSSGSNQ HQPKSDNCSG EPNLGSSPQK IFTKSPPITR 180 ERRKRKRTKA AKNKEEVESQ RMTHIAVERN RRRQMNDYLN SLRSLMPPCY IQRV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	186	RRKRKR
2	200	211	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490188.1	1e-172	PREDICTED: transcription factor bHLH67-like isoform X1
TrEMBL	A0A0D2SBI3	1e-170	A0A0D2SBI3_GOSRA; Uncharacterized protein
STRING	Gorai.007G113300.1	1e-171	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	8e-31	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G113300.6
Entrez Gene	105802851

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]