PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G114500.1

Common Name

B456_007G114500, LOC105802864

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 453aa MW: 51291.1 Da PI: 4.8401

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G114500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123.9	1.3e-38	44	174	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 G+rFhPtd el+++yL +k g++ + ++i+e+ di+ +ePw+Lp ++v ++++ wyfF + + ky++++r nr+t++g+Wk tgk + Gorai.007G114500.1 44 TGYRFHPTDFELLNYYLLNKNLGRDSLV-QAIAELeDICGLEPWQLPghSNVPSGDHVWYFFYRPSFKYQNSSRINRTTNEGFWKPTGKPR 133 7*********************9777.7788888*******5337778999****************************** PP NAM 91 evlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++++ ++ ++g k+tLvfykg ++++ kt W+mhey+l Gorai.007G114500.1 134 RIMAMdQDIEIGKKRTLVFYKGhvSDNTKMKTGWIMHEYEL 174 9856677*******98445666779******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	43.813	42	192	IPR003441	NAC domain
SuperFamily	SSF101941	4.18E-43	42	192	IPR003441	NAC domain
Pfam	PF02365	1.6E-21	44	174	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MRNKKGYHII HRIPNEERFS SYYCYYLFWV AVGYYLWKKI LTITGYRFHP TDFELLNYYL 60 LNKNLGRDSL VQAIAELEDI CGLEPWQLPG HSNVPSGDHV WYFFYRPSFK YQNSSRINRT 120 TNEGFWKPTG KPRRIMAMDQ DIEIGKKRTL VFYKGHVSDN TKMKTGWIMH EYELTATLPN 180 QTTFVLCKLK RKFGKAEVSC IDEGQSSHYL PPTLGNYIAN NANQAEAARC LTANSNPNEM 240 LTQLEALNDH EELEHQYIEL WNSYVGGDFP KHDGSGDFGT HGAENAIANH HLLTEIPMGQ 300 EVLQDQSGTN EQDISNLGEL GPGDERSNQH KLIMDDDGCN MPSNSENDAA EDSVKMDLST 360 FARPSTDEEV FAGLEALPEA QGNRIEQMID GWILDEGIPN AFDNQCSSSS IEGQNPTPIT 420 GGCNLPFAPD ALNLPRKRSR TDYCYEGFGF DT*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MRNKKGYHII HRIPNEERFS SYYCYYLFWV AVGYYLWKKI LTITGYRFHP TDFELLNYYL  60
LNKNLGRDSL VQAIAELEDI CGLEPWQLPG HSNVPSGDHV WYFFYRPSFK YQNSSRINRT  120
TNEGFWKPTG KPRRIMAMDQ DIEIGKKRTL VFYKGHVSDN TKMKTGWIMH EYELTATLPN  180
QTTFVLCKLK RKFGKAEVSC IDEGQSSHYL PPTLGNYIAN NANQAEAARC LTANSNPNEM  240
LTQLEALNDH EELEHQYIEL WNSYVGGDFP KHDGSGDFGT HGAENAIANH HLLTEIPMGQ  300
EVLQDQSGTN EQDISNLGEL GPGDERSNQH KLIMDDDGCN MPSNSENDAA EDSVKMDLST  360
FARPSTDEEV FAGLEALPEA QGNRIEQMID GWILDEGIPN AFDNQCSSSS IEGQNPTPIT  420
GGCNLPFAPD ALNLPRKRSR TDYCYEGFGF DT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-24	45	197	20	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-24	45	197	20	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-24	45	197	20	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-24	45	197	20	170	NO APICAL MERISTEM PROTEIN
3swm_A	3e-24	45	197	23	173	NAC domain-containing protein 19
3swm_B	3e-24	45	197	23	173	NAC domain-containing protein 19
3swm_C	3e-24	45	197	23	173	NAC domain-containing protein 19
3swm_D	3e-24	45	197	23	173	NAC domain-containing protein 19
3swp_A	3e-24	45	197	23	173	NAC domain-containing protein 19
3swp_B	3e-24	45	197	23	173	NAC domain-containing protein 19
3swp_C	3e-24	45	197	23	173	NAC domain-containing protein 19
3swp_D	3e-24	45	197	23	173	NAC domain-containing protein 19
4dul_A	2e-24	45	197	20	170	NAC domain-containing protein 19
4dul_B	2e-24	45	197	20	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847248	0.0	KC847248.1 Gossypium hirsutum NAC domain protein NAC71 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313995.1	0.0	NAC domain-containing protein 86-like
Refseq	XP_012490211.1	0.0	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	A0A0D2TDC9	0.0	A0A0D2TDC9_GOSRA; Uncharacterized protein
TrEMBL	W6JF14	0.0	W6JF14_GOSHI; NAC domain protein NAC71
STRING	Gorai.007G114500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19731	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03200.1	2e-30	NAC domain containing protein 45

Link Out ? help Back to Top
Phytozome	Gorai.007G114500.1
Entrez Gene	105802864

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]