PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G114500.2
Common NameB456_007G114500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 318aa    MW: 34996.5 Da    PI: 4.2196
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G114500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.11.1e-0853996128
                 NAM  96 kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                         ++ ++g k+tLvfykg  ++++  kt W+mhey+l
  Gorai.007G114500.2   5 QDIEIGKKRTLVFYKGhvSDNTKMKTGWIMHEYEL 39 
                         55679*********98445666779********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.878157IPR003441NAC domain
SuperFamilySSF1019413.66E-10457IPR003441NAC domain
PfamPF023657.2E-5939IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAMDQDIEIG KKRTLVFYKG HVSDNTKMKT GWIMHEYELT ATLPNQTTFV LCKLKRKFGK  60
AEVSCIDEGQ SSHYLPPTLG NYIANNANQA EAARCLTANS NPNEMLTQLE ALNDHEELEH  120
QYIELWNSYV GGDFPKHDGS GDFGTHGAEN AIANHHLLTE IPMGQEVLQD QSGTNEQDIS  180
NLGELGPGDE RSNQHKLIMD DDGCNMPSNS ENDAAEDSVK MDLSTFARPS TDEEVFAGLE  240
ALPEAQGNRI EQMIDGWILD EGIPNAFDNQ CSSSSIEGQN PTPITGGCNL PFAPDALNLP  300
RKRSRTDYCY EGFGFDT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472480.0KC847248.1 Gossypium hirsutum NAC domain protein NAC71 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313995.10.0NAC domain-containing protein 86-like
RefseqXP_012490211.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A0D2P7F00.0A0A0D2P7F0_GOSRA; Uncharacterized protein
STRINGGorai.007G114500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.13e-08NAC 014
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]