PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G122300.1

Common Name

B456_007G122300, LOC105802947

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 268aa MW: 29912.2 Da PI: 4.9161

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G122300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.3	2.1e-30	53	111	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+ Gorai.007G122300.1 53 SDLWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCKTDASMLIITYTSSHNHP 111 699*********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-31	47	113	IPR003657	WRKY domain
PROSITE profile	PS50811	30.974	47	113	IPR003657	WRKY domain
SuperFamily	SSF118290	7.72E-26	50	113	IPR003657	WRKY domain
SMART	SM00774	7.1E-36	52	112	IPR003657	WRKY domain
Pfam	PF03106	2.0E-25	54	111	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDDSVSPKLA SDDSELNPTG TQASKRRKVV EKIVVTVKVE ENGGKLKSEG PPSDLWSWRK 60 YGQKPIKGSP YPRGYYRCST SKGCSAKKQV ERCKTDASML IITYTSSHNH PGPNLHCADL 120 KQSPKEPETT HSDDDKPPTT TLKQLPEVSE KEPEEVKKEQ NKTSSTDEDA SEEQHFHYLQ 180 SPLSFPQNNI ISPEDPFNGN LEKTHDTLGF LLDEEPLSCL HITTSSIPKS EENDFFDELE 240 ELPISSAFTS LMMRSKFWDE GIPVVPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-22	53	113	17	79	Disease resistance protein RRS1
5w3x_D	2e-22	53	113	17	79	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031112	0.0	KF031112.1 Gossypium hirsutum WRKY transcription factor 93 (WRKY93) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490323.1	0.0	PREDICTED: WRKY transcription factor 22-like isoform X3
Refseq	XP_012490324.1	0.0	PREDICTED: WRKY transcription factor 22-like isoform X3
TrEMBL	A0A0D2SII6	0.0	A0A0D2SII6_GOSRA; Uncharacterized protein
STRING	Gorai.007G122300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	2e-34	WRKY family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G122300.1
Entrez Gene	105802947

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]