PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G122300.7
Common NameB456_007G122300, LOC105802947
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 269aa    MW: 29999.3 Da    PI: 4.9161
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G122300.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-3054112259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+
  Gorai.007G122300.7  54 SDLWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCKTDASMLIITYTSSHNHP 112
                         699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.97448114IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-3148114IPR003657WRKY domain
SuperFamilySSF1182907.72E-2651114IPR003657WRKY domain
SMARTSM007747.1E-3653113IPR003657WRKY domain
PfamPF031062.0E-2555112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDDSVSPKLA SDDSELNPTG TQASKRSRKV VEKIVVTVKV EENGGKLKSE GPPSDLWSWR  60
KYGQKPIKGS PYPRGYYRCS TSKGCSAKKQ VERCKTDASM LIITYTSSHN HPGPNLHCAD  120
LKQSPKEPET THSDDDKPPT TTLKQLPEVS EKEPEEVKKE QNKTSSTDED ASEEQHFHYL  180
QSPLSFPQNN IISPEDPFNG NLEKTHDTLG FLLDEEPLSC LHITTSSIPK SEENDFFDEL  240
EELPISSAFT SLMMRSKFWD EGIPVVPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-22541141779Disease resistance protein RRS1
5w3x_D2e-22541141779Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8258730.0KJ825873.1 Gossypium hirsutum WRKY protein 31 (WRKY31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490319.10.0PREDICTED: probable WRKY transcription factor 35 isoform X2
RefseqXP_012490320.10.0PREDICTED: probable WRKY transcription factor 35 isoform X2
RefseqXP_012490321.10.0PREDICTED: probable WRKY transcription factor 35 isoform X2
TrEMBLA0A0D2SBZ80.0A0A0D2SBZ8_GOSRA; Uncharacterized protein
STRINGGorai.007G122300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-34WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]