PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G124800.2

Common Name

B456_007G124800, LOC105802980

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 181aa MW: 19596.2 Da PI: 9.9293

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G124800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.7e-05	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F ++ L H++ H Gorai.007G124800.2 47 FECPFCHRVFANSQALGGHQNAH 69 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.88E-6	44	74	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.2E-4	45	73	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.51	47	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	49	69	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MADSSIPARS SSPVKPSSSL KLFGFSLTDQ PDEVLEKAEG FGESRKFECP FCHRVFANSQ 60 ALGGHQNAHK RERQKARRAQ FHSQQRLIAS APVLSSHSLR PTFPRGFTGN AAAKIVSQPF 120 YCPSRPLLLP STPSQYPPRI YVAQPLHFAT AAPALTDFSG QLPEADIGLD LHLKLSPSGC 180 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490357.1	1e-128	PREDICTED: zinc finger protein 6-like
TrEMBL	A0A0D2QRF5	1e-127	A0A0D2QRF5_GOSRA; Uncharacterized protein
STRING	Gorai.007G124800.1	1e-126	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	6e-13	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G124800.2
Entrez Gene	105802980

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]