PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G130100.1
Common NameB456_007G130100, LOC105803040
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 573aa    MW: 62698.7 Da    PI: 9.2423
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G130100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05106128123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Gorai.007G130100.1 106 FVCEICNKGFQRDQNLQLHRRGH 128
                         89*******************88 PP
2zf-C2H215.45.3e-05182204123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H++t+
  Gorai.007G130100.1 182 WKCDKCSKKYAVQSDWKAHQKTC 204
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.72E-8105128No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5105128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.017106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949106128IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SMARTSM0035598147177IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-5170203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.72E-8177203No hitNo description
SMARTSM0035594182202IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MKIKETDKLS TLSLYFLVSS QFQMSKISGD DGSLSSGNTG EEVHQLLLKN NSPPALVSNT  60
NSSSSQHPQP QPQPPVKRKR NLPGTPDPNA EVIALSPTTL MATNRFVCEI CNKGFQRDQN  120
LQLHRRGHNL PWKLRQRTTT EVKKRVYICP EPTCVHHNPA RALGDLTGIK KHFSRKHGEK  180
KWKCDKCSKK YAVQSDWKAH QKTCGTKEYK CDCGTIFSRR DSFITHRAFC DAIGAEENIK  240
VNQGLMNNAG SNLQNQMPDL LMSSMPMCNG NTSMGISDFN NFDSKSTPLK SLPQELVPMP  300
FKSMNIGGGT FSSSSGTLFG TTRSISSASS SLQLSSNGSS GFNYLQDTKK GCQIAGSPHM  360
SATALLQKAA QMGATASNSI NSPIMQTSFA SSMAGPDQAI RPPTFGGIQQ QNTSYDQFPS  420
QTDQSSMVGI SEGFSNQLMQ KSPNEFAQLF QGSSAMNEMG MLTNMLLNGV DRNQGLMKNM  480
EHEGSGSSYN LFQGRKPTGP SIYGTSSGGG NMTTLDFMGI GGLRPTNLHE QQHLQQRLEL  540
EAISQQRLPM MNPFQQQYSH GDSTIEKPIW DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-32178248372Zinc finger protein JACKDAW
5b3h_F3e-32178248372Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490441.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-113IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0D2P8610.0A0A0D2P861_GOSRA; Uncharacterized protein
STRINGGorai.007G130100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15443818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.15e-97C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]