PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G135600.1

Common Name

B456_007G135600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 347aa MW: 38899.4 Da PI: 4.9425

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G135600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.9	5.5e-06	220	246	5	31
HHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 5 hnerErrRRdriNsafeeLrellPkas 31 + +++r+RR ri +++ L+ellP++s Gorai.007G135600.1 220 AAAIDRQRRLRIDESIKALQELLPSSS 246 5799*********************83 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.563	215	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-9	217	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-9	217	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.33E-5	217	269	No hit	No description
SMART	SM00353	0.0058	221	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MDGQPGHENP LMSLNSGGSV NEFPYDYVDD TNPVLLTPTG RNRNQPSLQS LSQWIDCPKT 60 PHSYVEFLTE NLEKVPTADV LESIGSPIGG IHTVDGASEI QRELLHSNEG KAFSSGPDGY 120 SLESEQWNLK LSAYPTEINN HEASASERFL RQHDRIPMSR ISSSEYEFHA QLCVFQQNHA 180 SWMQKPKAED GNVSHLQSKE TISAPSFQSQ PLYHAPKSRA AAIDRQRRLR IDESIKALQE 240 LLPSSSERGL GNALDDIIDY VKFLQLQVKE LSRSRLGGEP TSNPFVFFEG YGHYVLHEQM 300 INEPLEEMMA KLLEINPSAA TQLLESRGLY MMPRALVDDF CTESHR*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MDGQPGHENP LMSLNSGGSV NEFPYDYVDD TNPVLLTPTG RNRNQPSLQS LSQWIDCPKT  60
PHSYVEFLTE NLEKVPTADV LESIGSPIGG IHTVDGASEI QRELLHSNEG KAFSSGPDGY  120
SLESEQWNLK LSAYPTEINN HEASASERFL RQHDRIPMSR ISSSEYEFHA QLCVFQQNHA  180
SWMQKPKAED GNVSHLQSKE TISAPSFQSQ PLYHAPKSRA AAIDRQRRLR IDESIKALQE  240
LLPSSSERGL GNALDDIIDY VKFLQLQVKE LSRSRLGGEP TSNPFVFFEG YGHYVLHEQM  300
INEPLEEMMA KLLEINPSAA TQLLESRGLY MMPRALVDDF CTESHR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589202	5e-88	JX589202.1 Gossypium hirsutum clone NBRI_GE23854 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490539.1	0.0	PREDICTED: transcription factor bHLH69-like isoform X1
Refseq	XP_012490540.1	0.0	PREDICTED: transcription factor bHLH69-like isoform X1
TrEMBL	A0A0D2SJI7	0.0	A0A0D2SJI7_GOSRA; Uncharacterized protein
STRING	Gorai.007G135600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12956	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	5e-21	LJRHL1-like 2

Link Out ? help Back to Top
Phytozome	Gorai.007G135600.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]