PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G135600.2

Common Name

B456_007G135600, LOC105803091

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 342aa MW: 38308.6 Da PI: 4.9425

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G135600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.4e-06	215	241	5	31
HHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 5 hnerErrRRdriNsafeeLrellPkas 31 + +++r+RR ri +++ L+ellP++s Gorai.007G135600.2 215 AAAIDRQRRLRIDESIKALQELLPSSS 241 5799*********************83 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.563	210	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-9	212	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.10E-5	212	264	No hit	No description
SuperFamily	SSF47459	7.33E-9	212	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0058	216	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MDGQPGHENP LMSLNSGGSV NEFPYDYVDD TNPVLLTPTG RNRNQPSLQS LSQWIDCPKT 60 PHSYVEFLTE NLEKVPTADV LESIGSPIGG IHTVDGASEI QRELLHSNEG KAFSSGPDGY 120 SLESEQWNLK LSAYPTEINN HEASASERFL RQHDRIPMSR ISSSEYEFHA QQNHASWMQK 180 PKAEDGNVSH LQSKETISAP SFQSQPLYHA PKSRAAAIDR QRRLRIDESI KALQELLPSS 240 SERGLGNALD DIIDYVKFLQ LQVKELSRSR LGGEPTSNPF VFFEGYGHYV LHEQMINEPL 300 EEMMAKLLEI NPSAATQLLE SRGLYMMPRA LVDDFCTESH R*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MDGQPGHENP LMSLNSGGSV NEFPYDYVDD TNPVLLTPTG RNRNQPSLQS LSQWIDCPKT  60
PHSYVEFLTE NLEKVPTADV LESIGSPIGG IHTVDGASEI QRELLHSNEG KAFSSGPDGY  120
SLESEQWNLK LSAYPTEINN HEASASERFL RQHDRIPMSR ISSSEYEFHA QQNHASWMQK  180
PKAEDGNVSH LQSKETISAP SFQSQPLYHA PKSRAAAIDR QRRLRIDESI KALQELLPSS  240
SERGLGNALD DIIDYVKFLQ LQVKELSRSR LGGEPTSNPF VFFEGYGHYV LHEQMINEPL  300
EEMMAKLLEI NPSAATQLLE SRGLYMMPRA LVDDFCTESH R*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589202	5e-88	JX589202.1 Gossypium hirsutum clone NBRI_GE23854 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490539.1	0.0	PREDICTED: transcription factor bHLH69-like isoform X1
Refseq	XP_012490540.1	0.0	PREDICTED: transcription factor bHLH69-like isoform X1
TrEMBL	A0A0D2P8H1	0.0	A0A0D2P8H1_GOSRA; Uncharacterized protein
STRING	Gorai.007G135600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	5e-21	LJRHL1-like 2

Link Out ? help Back to Top
Phytozome	Gorai.007G135600.2
Entrez Gene	105803091

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]