PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G139800.1
Common NameB456_007G139800, LOC105803138
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 420aa    MW: 46526.3 Da    PI: 9.2359
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G139800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-057496123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  Gorai.007G139800.1 74 FICEICNKGFQRDQNLQLHRRGH 96
                        89*******************88 PP
2zf-C2H212.50.00046150172123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Gorai.007G139800.1 150 WKCEKCSKIYAVQSDWKAHSKTC 172
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-57396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.94E-67396No hitNo description
SMARTSM003550.0227496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8457496IPR007087Zinc finger, C2H2
PfamPF121714.8E-57496IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM00355260115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.94E-6145170No hitNo description
SMARTSM00355170150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MFPAATMSNS TSLSEEANVS SGTRVQDFGG LNPVVTHQQL PQKMKKKRSL PGNPDPDAEV  60
IALSPKTLLA TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNSKEV KKKAYVCPEP  120
TCVHHHPSRA LGDLTGIKKH YCRKHGEKKW KCEKCSKIYA VQSDWKAHSK TCGTREYRCD  180
CGTLFSRKDS FITHRAFCDA LAEESARLSA NQLAAAANPA LNPSSLFPYQ NPWDPIQTSN  240
PNPNDPLQVK PESQHFTPYF QEPPLPPPKA LFTSPFQSLH VSNNPPSNAA ATSATPQLSA  300
TALLQKATTV GATATQIKNN NYYYSMATHL SPDFSGFTAA DLATWQKNSD RFTRDFLGLT  360
RDHQGGNGNV NLSMNPRDVL SYTGGVELQH FERGQPLLRP QGFGFPEPYA ATSETWGDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36146210367Zinc finger protein JACKDAW
5b3h_F1e-36146210367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-130AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490609.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotO227591e-130IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A0D2SJN70.0A0A0D2SJN7_GOSRA; Uncharacterized protein
STRINGGorai.007G139800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-126indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]