PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G147300.2
Common NameB456_007G147300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 193aa    MW: 22062.7 Da    PI: 7.3611
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G147300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.12.8e-2687562128
                 NAM  62 skrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + rd+kyatg r+nrat+sgyWkatgkd+ vl+  ++e+vg++ktLvfy++rap+g+kt W+mhe+rl
  Gorai.007G147300.2   8 CFRDRKYATGFRTNRATTSGYWKATGKDRMVLDPtTEEVVGMRKTLVFYRNRAPNGVKTGWIMHEFRL 75 
                         5799*****************************977888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.496194IPR003441NAC domain
SuperFamilySSF1019412.35E-33894IPR003441NAC domain
PfamPF023655.4E-121275IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MRAMAASCFR DRKYATGFRT NRATTSGYWK ATGKDRMVLD PTTEEVVGMR KTLVFYRNRA  60
PNGVKTGWIM HEFRLHTPHL PPKEEWVLCR VFHKSKEENS AKLSSPMMLE TSSTHHAHET  120
AYQHISSLST TTPTYQSHAQ CLLNLLQYNS HQENNSNEVS SKVDDGYEFL WDMEENSLEC  180
SWGGFQLGGH EI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-23109479165NO APICAL MERISTEM PROTEIN
1ut4_B4e-23109479165NO APICAL MERISTEM PROTEIN
1ut7_A4e-23109479165NO APICAL MERISTEM PROTEIN
1ut7_B4e-23109479165NO APICAL MERISTEM PROTEIN
3swm_A5e-23109482168NAC domain-containing protein 19
3swm_B5e-23109482168NAC domain-containing protein 19
3swm_C5e-23109482168NAC domain-containing protein 19
3swm_D5e-23109482168NAC domain-containing protein 19
3swp_A5e-23109482168NAC domain-containing protein 19
3swp_B5e-23109482168NAC domain-containing protein 19
3swp_C5e-23109482168NAC domain-containing protein 19
3swp_D5e-23109482168NAC domain-containing protein 19
4dul_A4e-23109479165NAC domain-containing protein 19
4dul_B4e-23109479165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472170.0KC847217.1 Gossypium hirsutum NAC domain protein NAC40 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314147.11e-137protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_012490707.11e-137PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE62e-36NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0D2QSS01e-144A0A0D2QSS0_GOSRA; Uncharacterized protein
STRINGGorai.007G147300.11e-136(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-51NAC domain containing protein 74
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  6. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  7. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]