PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G147300.3

Common Name

B456_007G147300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 210aa MW: 24068 Da PI: 6.9125

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G147300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.3	6.3e-32	12	92	49	128
NAM 49 kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ vl+ ++e+vg++ktLvfy++rap+g+kt W+mhe+rl Gorai.007G147300.3 12 EAAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRMVLDPtTEEVVGMRKTLVFYRNRAPNGVKTGWIMHEFRL 92 44555789************************************977888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.528	1	111	IPR003441	NAC domain
SuperFamily	SSF101941	6.15E-40	9	111	IPR003441	NAC domain
Pfam	PF02365	8.9E-16	19	92	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MGLIGDLIKL TEAAKLNANE WYFFSFRDRK YATGFRTNRA TTSGYWKATG KDRMVLDPTT 60 EEVVGMRKTL VFYRNRAPNG VKTGWIMHEF RLHTPHLPPK EEWVLCRVFH KSKEENSAKL 120 SSPMMLETSS THHAHETAYQ HISSLSTTTP TYQSHAQCLL NLLQYNSHQE NNSNEVSSKV 180 DDGYEFLWDM EENSLECSWG GFQLGGHEI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-28	10	111	62	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-28	10	111	62	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-28	10	111	62	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-28	10	111	62	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-28	10	111	65	168	NAC domain-containing protein 19
3swm_B	2e-28	10	111	65	168	NAC domain-containing protein 19
3swm_C	2e-28	10	111	65	168	NAC domain-containing protein 19
3swm_D	2e-28	10	111	65	168	NAC domain-containing protein 19
3swp_A	2e-28	10	111	65	168	NAC domain-containing protein 19
3swp_B	2e-28	10	111	65	168	NAC domain-containing protein 19
3swp_C	2e-28	10	111	65	168	NAC domain-containing protein 19
3swp_D	2e-28	10	111	65	168	NAC domain-containing protein 19
4dul_A	1e-28	10	111	62	165	NAC domain-containing protein 19
4dul_B	1e-28	10	111	62	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847217	0.0	KC847217.1 Gossypium hirsutum NAC domain protein NAC40 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001314147.1	1e-149	protein CUP-SHAPED COTYLEDON 3-like
Refseq	XP_012490707.1	1e-149	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBL	A0A0D2P923	1e-157	A0A0D2P923_GOSRA; Uncharacterized protein
STRING	Gorai.007G147300.1	1e-148	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	3e-61	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	Gorai.007G147300.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]