PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G156300.1
Common NameB456_007G156300, LOC105803307
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 234aa    MW: 26546.1 Da    PI: 10.7144
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G156300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.31.4e-11109150351
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Gorai.007G156300.1 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150
                         59**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-4108167IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-8108152IPR016177DNA-binding domain
PfamPF008478.5E-6109151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-6111161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGRSSFL TPLPRAFDSG NIPENSSHNA KSVSAHPLPS DFINHVHGKS  60
IAKVDFASPN VSGSGSSKEH HSQPFPGQPI KRRKRHRRKH LQNQEQCMMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNIEL PEEEKQELRK FKWDEFLAYT  180
RRSITNKKYK RRLEVEAQKR PVSATANGEW DTKQVVRNSF SASEEMGPDS SAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.6675e-93seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487788985e-93
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490875.11e-175PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_012490876.11e-175PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_012490877.11e-175PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_012490878.11e-175PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_012490879.11e-175PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0D2TFG61e-174A0A0D2TFG6_GOSRA; Uncharacterized protein
STRINGGorai.007G156300.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-47ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]