PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G167000.2
Common NameB456_007G167000, LOC105803424
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 537aa    MW: 60138.1 Da    PI: 5.6078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G167000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.22.4e-1401665361374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+++L+ cA+a+s++dl +aq+l+ +l+ ++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s++ l+++++++ev+P+l
  Gorai.007G167000.2 166 LKQVLVFCAKALSDNDLLMAQWLMDELRRMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPK---SADLLSYMHILYEVCPYL 253
                         5799*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae ++vpfef++
  Gorai.007G167000.2 254 KFGYMSANGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLNIVGKRLSKLAEYFKVPFEFHA 344
                         **********************************************************998899999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a +  +++ e+L+v+pgE++aVn++++lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F+ rfle+l+yy+a+f+s+
  Gorai.007G167000.2 345 -AAMSGCEVQREHLQVRPGETVAVNFAFMLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFFPRFLETLNYYTAMFESI 434
                         .89999************************************************************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpre++eri vE+++l+r++vn++acegaer+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll+++ ++ yr+ee++g+l+lgW
  Gorai.007G167000.2 435 DVTLPREHKERIDVEQQCLARDVVNIIACEGAERVERHELLGKWRSRFRMAGFTPYPLSSLVNATIKTLLENYCDR-YRLEERDGALYLGW 524
                         **************************************************************************66.************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++r Lv+ +aW+
  Gorai.007G167000.2 525 MNRDLVASCAWK 536
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.117140517IPR005202Transcription factor GRAS
PfamPF035148.4E-138166536IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MQASQQHRSS VMASRLYHQI KQEVEPEPYW FPQLPPTDPS LCYSDGFHFS VESSNENFCT  60
LESSSANGSY TAYNSTSLVG FSPNGSPMSQ QDSQSYPSDL HHSPDNNGGS PISGSCVTDD  120
VSDLRDKLKE LETVMLGPDS DVIDSKTSLE MGTWRLVTDA ISRGDLKQVL VFCAKALSDN  180
DLLMAQWLMD ELRRMVSVSG EPIQRLGAYM LEGLVARLAS SGSSIYKALR CKEPKSADLL  240
SYMHILYEVC PYLKFGYMSA NGAIAEAMKD EDRVHIIDFQ IAQGSQWITL IQAFAARPGG  300
PPHIRITGID DSTSAYARGG GLNIVGKRLS KLAEYFKVPF EFHAAAMSGC EVQREHLQVR  360
PGETVAVNFA FMLHHMPDES VSTENHRDRL LRLVKSLSPK VVTLVEQESN TNTAPFFPRF  420
LETLNYYTAM FESIDVTLPR EHKERIDVEQ QCLARDVVNI IACEGAERVE RHELLGKWRS  480
RFRMAGFTPY PLSSLVNATI KTLLENYCDR YRLEERDGAL YLGWMNRDLV ASCAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6417353526378Protein SCARECROW
5b3h_A6e-6417353525377Protein SCARECROW
5b3h_D6e-6417353525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491059.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_012491060.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_012491061.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_012491062.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_012491063.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0D2SLE70.0A0A0D2SLE7_GOSRA; Uncharacterized protein
STRINGGorai.007G167000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]