PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G167100.1
Common NameB456_007G167100, LOC105803425
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 404aa    MW: 44163.2 Da    PI: 8.2873
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G167100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.42e-3093150260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK vkg+ef rsYY+Ct+++C++kk++ers+ d+k+++++Y g+H+h+k
  Gorai.007G167100.1  93 QDGYNWRKYGQKLVKGNEFVRSYYKCTHPNCRAKKQLERSH-DGKMIDTVYVGQHDHPK 150
                         7****************************************.***************85 PP
2WRKY106.71.1e-33264322159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++d k+v++tYeg+H+h+
  Gorai.007G167100.1 264 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDAKLVITTYEGQHDHD 322
                         58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.54887151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-2689151IPR003657WRKY domain
SuperFamilySSF1182903.01E-2491151IPR003657WRKY domain
SMARTSM007741.1E-3292150IPR003657WRKY domain
PfamPF031067.3E-2493149IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-35250324IPR003657WRKY domain
SuperFamilySSF1182902.75E-29257324IPR003657WRKY domain
PROSITE profilePS5081136.036259324IPR003657WRKY domain
SMARTSM007744.2E-39264323IPR003657WRKY domain
PfamPF031062.4E-26265321IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MVPSGECVTD EVGKDKLRSP DAGSHALQHN TDSKIPSSQS DQGGETPLIK SEKDPLSQSE  60
KLGNASSVIT KQTPSLLPGM EGSSPVARER ASQDGYNWRK YGQKLVKGNE FVRSYYKCTH  120
PNCRAKKQLE RSHDGKMIDT VYVGQHDHPK PLNLPLAVGF AVSVVEERPD KSLQIVVKDK  180
SLHSQMPHQI EPRSGSQPLS SAVSDVKGAA SKSNRIQNVA DSDDDHLVSK RRKKENSNAD  240
ASPVEKPTND SRMVIKTFSE VDIVNDGYRW RKYGQKLVKG NPNPRSYYRC SSPGCPVKKH  300
VERASHDAKL VITTYEGQHD HDLPPTRSVT HNTTGVTVHS AAHSDESRTK VEESETVCLD  360
MVVYSGSVAE NKSSEQLNGE LRTKSDFSGT VCVSLIDAPI SGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-3894325175WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384740.0KM438474.1 Gossypium aridum WRKY95 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491064.10.0PREDICTED: WRKY transcription factor 1-like
SwissprotQ9SI373e-97WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A0D2PAI00.0A0A0D2PAI0_GOSRA; Uncharacterized protein
STRINGGorai.007G167100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-101zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]