PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G207200.1
Common NameB456_007G207200, LOC105803846
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 801aa    MW: 86838.2 Da    PI: 7.2212
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G207200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-095826191954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Gorai.007G207200.1 582 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 619
                         664459******************************88 PP
2BELL122.41.9e-39442513172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +r e+q++k+kLls+l+eV++rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  Gorai.007G207200.1 442 DRIEHQRRKVKLLSMLDEVERRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQL 513
                         589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.8E-83371511IPR006563POX domain
PfamPF075262.2E-52376510IPR006563POX domain
PROSITE profilePS5007112.568560623IPR001356Homeobox domain
SMARTSM003891.2E-9563627IPR001356Homeobox domain
CDDcd000861.19E-12563624No hitNo description
SuperFamilySSF466894.15E-17565630IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-29566629IPR009057Homeodomain-like
PfamPF059204.1E-18580619IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MGIATPPLVA SILSQESQPS KKIHHQIPIQ HKSNNSTNSM SQDYHQAAGI FSFSNGFERS  60
AVSHQEHQQQ QQQHLEQQIR RDKLRVQGFE PPPPPLVGIE EEESTSLPVY ETAGMLSEMF  120
NFPSGAAAAA AAATASTELL DQHVRPNYRA HRPPGNTNEW YSNRQGAVGG LGQLGESKSH  180
ITRDSLAQQQ QQLPSINADS AAAMNLFLMN PQQRSPSPPP PPPATSSNTL HMLLPNPSTS  240
LQGFNVSGPG GGFGTSTVLS PPQFTWVPGS AHEGGNNTDS QLSSLNEIGS VVEGQGLSLS  300
LSSSLQHLEA AKAEELRMGD GGLLYYNQGG GSAPQFHQYR NLGSHHHQTM HLQGGVGQNQ  360
QVHHVGFGSS LGMVNVLRNS KYVKAAQELL EEFCSVGRGQ FKKNKFGRNN TNPSSDPGSS  420
GGAGGGGSSS STKDLPPLSA ADRIEHQRRK VKLLSMLDEV ERRYNHYCEQ MQMVVNSFDL  480
VMGFGAAVPY TALAQKAMSR HFRCLKDAIS AQLKHSCEML GEKDGAGSSG ITKGETPRLR  540
MLEQSLRQQR AFNQMGMMEQ EAWRPQRGLP ERSVNILRAW LFEHFLHPYP SDADKHLLAR  600
QTGLSRNQVS NWFINARVRL WKPMVEEMYQ QETKEEGDHK NNNNNNHTER ERNPNNNNNA  660
QTSTPSTTAA PTTTTTTSVG KGSQINATEN DPSLIAINTP QCFSENQANP NAAEVAPPIS  720
QPFTTSIPHD SDIHHQRIAG TTVAAADYGT TAGGNTDIGS SLIRLGTTTA GDVSLTLGLR  780
HAGNMPENTS SFSVRDFGGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16569627563Homeobox protein Meis2
3k2a_B2e-16569627563Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491705.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_012491706.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A0D2QWN90.0A0A0D2QWN9_GOSRA; Uncharacterized protein
STRINGGorai.007G207200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-180BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]