PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G209200.3
Common NameB456_007G209200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 490aa    MW: 55529.7 Da    PI: 9.1651
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G209200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.4e-16109194186
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.....yvltkGWkeFvkangLkegDfvvFkl 84 
                         ff v++++ +  ++  ++pk+f +++ ++  ++ +++l d+sg++W+ +++        +     + l +GW  Fv++n+L++gD++ F+l
  Gorai.007G209200.3 109 FFLVFMQPTYVGLHSKSIPKEFSRKYLMD--QG-DVILCDSSGNTWSAQYRAtlG----MngqpyVKLLNGWDAFVRDNNLQVGDVCAFEL 192
                         777888888888889***********656..22.7***************66541....22245577889********************8 PP

                         -S CS
                  B3  85 dg 86 
                         ++
  Gorai.007G209200.3 193 ID 194
                         75 PP
2B358.99e-19265361197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                         f+ vl ps+v +++ l+++++f+++h + + +++ + l+ ++g+sW  ++    +s +     + +GW+ Fv++n+Lk+gD++vF+l++++
  Gorai.007G209200.3 265 FVVVLRPSYVQSHA-LCISNDFTRKHFKTTLTNIGIALRLSNGKSWPAEYHQ--RSIGnpnARICNGWRAFVNDNKLKVGDVCVFELVSDT 352
                         67788888888887.***********888899999***************33..333334677889*********************9988 PP

                         EE..EEEEE CS
                  B3  89 efelvvkvf 97 
                         + + +v +f
  Gorai.007G209200.3 353 QISVKVIIF 361
                         877777666 PP
3B340.74.2e-13401483995
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         +  k++++ +p +f+e++ +++ ++  l+l +   r+W v+++ + + +   lt+GW +F+++n L+egD++v +ld  ++  l+v+
  Gorai.007G209200.3 401 HL-KEDCVDIPFRFVEQYFEPNVQK--LIL-QVADRTWPVEITSNPRIRIAKLTSGWIKFARENSLREGDICVYELDTVDNNLLKVS 483
                         44.45559**********7675564..554.4477*******77777777*************************987666556665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.447146IPR003340B3 DNA binding domain
CDDcd100171.26E-7244No hitNo description
SuperFamilySSF1019362.16E-10353IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-10555IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-20102206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-20103206IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-19108206No hitNo description
PfamPF023625.0E-15109194IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155109208IPR003340B3 DNA binding domain
SMARTSM010197.9E-11110208IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-22258358IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-24258359IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-18263359No hitNo description
PROSITE profilePS5086312.971264364IPR003340B3 DNA binding domain
PfamPF023627.2E-17265362IPR003340B3 DNA binding domain
SMARTSM010195.6E-14265364IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16388485IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-13391482IPR015300DNA-binding pseudobarrel domain
CDDcd100177.35E-15392486No hitNo description
PROSITE profilePS5086311.984392488IPR003340B3 DNA binding domain
SMARTSM010196.3E-10393488IPR003340B3 DNA binding domain
PfamPF023621.5E-10401483IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MKLDGKLWVQ NGWRKFTEHY SLELGHFLVF RYQRNCRFHV LIFDRSASEI HYPYANNIST  60
DMTKKPVLQC PRPPKIMRAS NNGFSATKGN EKSKALERAS SAIKSGNPFF LVFMQPTYVG  120
LHSKSIPKEF SRKYLMDQGD VILCDSSGNT WSAQYRATLG MNGQPYVKLL NGWDAFVRDN  180
NLQVGDVCAF ELIDCIDISF QVVIYSSKKA DFHGSPAQME AGMTLTRSEC LEPVKARETA  240
FHREMKVREK ALQRALAFTS ENPFFVVVLR PSYVQSHALC ISNDFTRKHF KTTLTNIGIA  300
LRLSNGKSWP AEYHQRSIGN PNARICNGWR AFVNDNKLKV GDVCVFELVS DTQISVKVII  360
FQAIADEDSH PSQGASEEAL GLTSQSAKAP LIFRRVVLPL HLKEDCVDIP FRFVEQYFEP  420
NVQKLILQVA DRTWPVEITS NPRIRIAKLT SGWIKFAREN SLREGDICVY ELDTVDNNLL  480
KVSISKYAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491740.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X3
TrEMBLA0A0D2QWQ80.0A0A0D2QWQ8_GOSRA; Uncharacterized protein
STRINGGorai.007G209200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.13e-16B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]