PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G216700.1
Common NameB456_007G216700, LOC105803950
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 344aa    MW: 37643.3 Da    PI: 9.5896
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G216700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31272329359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Gorai.007G216700.1 272 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHS 329
                         99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.5E-17222268IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.4E-33258329IPR003657WRKY domain
PROSITE profilePS5081130.963265331IPR003657WRKY domain
SuperFamilySSF1182903.79E-27267329IPR003657WRKY domain
SMARTSM007741.3E-38270330IPR003657WRKY domain
PfamPF031062.9E-27272328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAVELMMSCR NGDSFAAKME ENAVKEAASG LESVEKLIRL LSQTQQQQQS NSNNQEKYQA  60
SSISTTSNSL DLEMDCKAEA DAAVSRFKRV ISLLDRTRTG HARFRRAPVQ PNQEQETKVY  120
YATPIQQIPP PVTTAYPLPP PPPPPPHHHD FMTVKTGGLE RIDSSKTINF SYSSAGNSFM  180
SSLTGDTDSK QPCSSSSAFQ ITNFSQVSSS GKPPLSSSSS FKRKCSSDNL GSGKCTSGSS  240
GRCHCSKKRK LRSKRVVRVP AISLKMADIP PDDYSWRKYG QKPIKGSPHP RGYYKCSSVR  300
GCPARKHVER ALDDPSMLVV TYEGEHNHSL SVAETTNLIL ESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-212673301476Probable WRKY transcription factor 4
2lex_A2e-212673301476Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311130.0KF031113.1 Gossypium hirsutum WRKY transcription factor 97 (WRKY97) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491862.10.0PREDICTED: probable WRKY transcription factor 15
SwissprotO221761e-93WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A0D2SHV00.0A0A0D2SHV0_GOSRA; Uncharacterized protein
STRINGGorai.007G216700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.12e-74WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  4. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]