PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G219600.1
Common NameB456_007G219600, LOC105803980
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 349aa    MW: 39691.4 Da    PI: 6.3259
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G219600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.73.6e-24957149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k+ien + r++tf+kR+ g+ KKA+ELS+LCd+eva+iifs+ gkl+ +
  Gorai.007G219600.1  9 KKIENRTYRHITFAKRKSGLVKKAYELSTLCDIEVALIIFSPAGKLFLF 57
                        68*******************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.235161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-26278IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-22323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGRVKLELKK IENRTYRHIT FAKRKSGLVK KAYELSTLCD IEVALIIFSP AGKLFLFDGK  60
KRIEEILAEY MELPARRRGW VLDQELIRRI VTQLNVEASF YGVIRRDKDS ENLLKEIQNG  120
IVVCGTELEQ VERNLQFFLK NPSSLDTITE VMYHEMILEE TLELVRLRKR VLEANEFVGP  180
TRMEFGANIV PNLVDPSEIP LHAQNASAQA CLERGLNYNF MNWPPLNDVQ APTNFTHQSI  240
GLQQPLRNLA EPLVERLPFP MRLPSPMRSH HLQGHGHLGG NEVSTQPNMN FDDYVYRPAP  300
PIVNANFPPM NMDTMPQAAP RGSEAEAEAE NWRSGNSSNP DSSLWFLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-15189191MEF2 CHIMERA
6bz1_B2e-15189191MEF2 CHIMERA
6bz1_C2e-15189191MEF2 CHIMERA
6bz1_D2e-15189191MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364460.0HM236446.1 Gossypium hirsutum MADS30 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491910.10.0PREDICTED: MADS-box transcription factor 7-like
TrEMBLA0A0D2SPF20.0A0A0D2SPF2_GOSRA; Uncharacterized protein
STRINGGorai.007G219600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17254910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.24e-32AGAMOUS-like 67
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]